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Thousands of birds and fish threatened by mining for clean energy transition

Fri, 26/07/2024 - 16:00

New research has found that 4,642 species of vertebrate are threatened by mineral extraction around the world through mining and quarrying, and drilling for oil and gas.

Mining activity coincides with the world's most valuable biodiversity hotspots, which contain a hyper-diversity of species and unique habitats found nowhere else on Earth.

The biggest risk to species comes from mining for materials fundamental to our transition to clean energy, such as lithium and cobalt – both essential components of solar panels, wind turbines and electric cars.

Quarrying for limestone, which is required in huge amounts for cement as a construction material, is also putting many species at risk.

The threat to nature is not limited to the physical locations of the mines - species living at great distances away can also be impacted, for example by polluted watercourses, or deforestation for new access roads and infrastructure.

The researchers say governments and the mining industry should focus on reducing the pollution driven by mining as an ‘easy win’ to reduce the biodiversity loss associated with mineral extraction.

This is the most complete global assessment of the threat to biodiversity from mineral extraction ever undertaken. The results are published today in the journal Current Biology.

“We simply won’t be able to deliver the clean energy we need to reduce our climate impact without mining for the materials we need, and that creates a problem because we’re mining in locations that often have very high levels of biodiversity,” said Professor David Edwards in the University of Cambridge’s Department of Plant Sciences and Conservation Research Institute, senior author of the report.

He added: “So many species, particularly fish, are being put at risk through the pollution caused by mining. It would be an easy win to work on reducing this freshwater pollution so we can still get the products we need for the clean energy transition, but in a way that isn’t causing so much biodiversity loss.”

Across all vertebrate species, fish are at particularly high risk from mining (2,053 species), followed by reptiles, amphibians, birds and mammals. The level of threat seems to be linked to where a particular species lives and its lifestyle: species using freshwater habitats, and species with small ranges are particularly at risk.

“The need for limestone as a core component of construction activity also poses a real risk to wildlife. Lots of species are very restricted in where they live because they're specialised to live on limestone. A cement mine can literally take out an entire hillside - and with it these species’ homes,” said Ieuan Lamb in the University of Sheffield’s School of Biosciences, first author of the report.

The Bent-Toed Gecko, for example, is threatened by limestone quarrying in Malaysia – it only exists on a single mountain range that planned mining activity will completely destroy.

To get their results, the researchers used International Union for the Conservation of Nature (IUCN) data to see which vertebrate species are threatened by mining. By mapping the locations of these species they could investigate the types of mining that are putting species at risk, and see where the risks are particularly high.

The researchers discovered that species categorised as ‘vulnerable, endangered, or critically endangered’ are more threatened by mineral extraction than species of lesser concern.

Watercourses can be affected in many ways, and water pollution can affect hundreds of thousands of square kilometres of rivers and flood plains. Mining sand as a construction material, for example, alters patterns of water flow in rivers and wetlands, making birds like the Indian Skimmer more accessible to predators.

Mineral extraction threatens vertebrate species populations across the tropics, with hotspots in the Andes, coastal West and Central Africa, and South-East Asia – which coincide with high mine density. For example, artisanal small-scale alluvial gold mining in Ghana threatens important bird areas through environmental mercury pollution.

Global demand for metal minerals, fossil fuels and construction materials is growing dramatically, and the extraction industry is expanding rapidly to meet this demand. In 2022 the revenue of the industry as a whole was estimated at US $943 billion.

Biodiversity underpins the protection of the world’s carbon stocks, which help to mitigate climate change.

The study focused only on vertebrate species, but the researchers say mining is also likely to be a substantial risk to plants and invertebrates.

“There's no question that we are going to continue to mine - our entire societies are based on mined products. But there are environmental tensions embodied in our use of these products. Our report is a vital first step in avoiding biodiversity loss amidst the predicted drastic expansion of the mining industry,” said Edwards.

“Wildlife is more sensitive to mining in some regions of the world than in others, and our report can inform choices of where to prioritise getting our minerals to cause the least damage to biodiversity. Future policy should also focus on creating more circular economies - increasing recycling and reuse of materials, rather than just extracting more,” said Lamb.

The research was funded by the Hossein Farmy scholarship.

Reference: Lamb, I.P., ‘Global threats of extractive industries on vertebrate biodiversity.’ Current Biology, July 2024. DOI: 10.1016/j.cub.2024.06.077

Our increasing demand for metals and minerals is putting over four thousand vertebrate species at risk, with the raw materials needed for clean energy infrastructure often located in global biodiversity hotspots, a study has found.

Our report is a vital first step in avoiding biodiversity loss amidst the predicted drastic expansion of the mining industry.David EdwardsGold mine in Rondonia, Amazonian Brazil


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New genetic test will eliminate a form of inherited blindness in dogs

Mon, 22/07/2024 - 00:38

Progressive retinal atrophy (PRA) is a group of inherited diseases that causes progressive degeneration of the light sensitive cells at the back of the eye. Dogs with PRA have normal sight at birth, but by the age of four or five they will be totally blind. There is no treatment.

Now a team led by the University of Cambridge has identified the genetic mutation that causes PRA in English Shepherd Dogs, and developed a DNA test for it. By identifying dogs carrying the disease before their eyesight starts to fail, this provides a tool to guide breeding decisions so the disease is not passed on to puppies.

Owners usually don’t realise their dog has PRA until it is middle-aged, by which time it might have bred, and passed on the faulty gene to its puppies. This has made it a difficult disease to control.

The new discovery means that progressive retinal atrophy can now be completely eliminated from the English Shepherd Dog population very quickly.

The results are published today in the journal Genes.

“Once the dog’s eyesight starts to fail there’s no treatment – it will end up totally blind,” said Katherine Stanbury, a researcher in the University of Cambridge’s Department of Veterinary Medicine and first author of the report.

She added: “Now we have a DNA test, there’s no reason why another English Shepherd Dog ever needs to be born with this form of progressive retinal atrophy – it gives breeders a way of totally eliminating the disease.”

The genetic mutation identified by the team is recessive, which means it only causes blindness if the English Shepherd Dog inherits two copies of it. If the dog only has one copy this makes it a carrier – it will not develop PRA but can pass the mutation on to its puppies. If two carriers are bred together, about one in four of the puppies will be affected with PRA.

Dogs breeds are very inbred, so many individuals are related – giving them a much higher chance of being affected by recessive diseases than humans.

The team began the research after being contacted by a distraught owner of an English Shepherd Dog that had been recently diagnosed with PRA. The dog had been working as a search and rescue dog but had to retire due to visual deterioration that has resulted in total blindness. The researchers put out a call for DNA samples from other owners or breeders of this breed, and received samples from six English Shepherds with PRA and twenty without it. This was enough for them to pinpoint the genetic mutation responsible for PRA using whole genome sequencing.

The team offers a commercial canine genetic testing service providing DNA tests to dog breeders to help them avoid breeding dogs that will develop inherited diseases. As part of this they will now offer a DNA test for Progressive Retinal Atrophy in English Shepherds. Anyone can buy a testing kit, costing just £48, to take a swab from inside their dog’s mouth and send it back for testing.

“An owner won't necessarily notice their dog has got anything wrong with its eyes until it starts bumping into the furniture. Unlike humans who will speak up if their sight isn’t right, dogs just have to get on with things,” said Dr Cathryn Mellersh in the University of Cambridge’s Department of Veterinary Medicine, senior author of the report.

She added: “For the price of a decent bag of dog food people can now have their English Shepherd tested for Progressive Retinal Atrophy prior to breeding. It’s about prevention, rather than a cure, and it means a huge amount to the people who breed these dogs. They no longer need to worry about whether the puppies are going to be healthy or are going to develop this horrible disease in a few years’ time.”

The English Shepherd is a breed of herding dog popular in the United States and is closely related to the Border Collie.

The new discovery is the thirty-third genetic mutation causing an inherited disease in dogs that the team has found – twenty-three of which cause eye diseases. They say that the health and wellbeing of many dogs has been compromised because of how they have been bred by humans.

PRA occurs in many dog breeds including the English Shepherd Dog. And it is similar to a disease called retinitis pigmentosa in humans, which also causes blindness. The researchers say that their work with dogs could shed light on the human version of the disease and potentially identify targets for gene therapy in the future.

The work was carried out in collaboration with Wisdom Panel, Mars Petcare, as part of the Consortium to Research Inherited Eye Diseases in Dogs (CRIEDD), with funding from the Dog’s Trust and the Kennel Club Charitable Trust.

Reference: Stanbury, K. et al, ‘Exonic SINE insertion in FAM161A is associated with autosomal recessive progressive retinal atrophy in the English Shepherd.’ July 2024.

Cambridge scientists have identified the genetic mutation that causes progressive retinal atrophy in English Shepherd Dogs, which results in incurable blindness, and developed a genetic test to help eliminate the disease from future generations of the breed.

Now we have a DNA test, there’s no reason why another English Shepherd Dog ever needs to be born with this form of progressive retinal atrophy – it gives breeders a way of totally eliminating the disease.Katherine StanburyEnglish Shepherd puppy


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Journeys of discovery: Steve Jackson and a life-saving cancer drug

Mon, 15/07/2024 - 08:00

What excites Steve Jackson is understanding how biology works and why it sometimes goes wrong. But what galvanises him is knowing there are people alive today as a result of his discovery of how to create a cancer drug.

Artificial intelligence outperforms clinical tests at predicting progress of Alzheimer’s disease

Fri, 12/07/2024 - 23:30

The team say this new approach could reduce the need for invasive and costly diagnostic tests while improving treatment outcomes early when interventions such as lifestyle changes or new medicines may have a chance to work best.

Dementia poses a significant global healthcare challenge, affecting over 55 million people worldwide at an estimated annual cost of $820 billion. The number of cases is expected to almost treble over the next 50 years.

The main cause of dementia is Alzheimer’s disease, which accounts for 60-80% of cases. Early detection is crucial as this is when treatments are likely to be most effective, yet early dementia diagnosis and prognosis may not be accurate without the use of invasive or expensive tests such as positron emission tomography (PET) scans or lumbar puncture, which are not available in all memory clinics. As a result, up to a third of patients may be misdiagnosed and others diagnosed too late for treatment to be effective.

A team led by scientists from the Department of Psychology at the University of Cambridge has developed a machine learning model able to predict whether and how fast an individual with mild memory and thinking problems will progress to developing Alzheimer’s disease. In research published today in eClinical Medicine, they show that it is more accurate than current clinical diagnostic tools.

To build their model, the researchers used routinely-collected, non-invasive, and low-cost patient data – cognitive tests and structural MRI scans showing grey matter atrophy – from over 400 individuals who were part of a research cohort in the USA.

They then tested the model using real-world patient data from a further 600 participants from the US cohort and – importantly – longitudinal data from 900 people from memory clinics in the UK and Singapore.

The algorithm was able to distinguish between people with stable mild cognitive impairment and those who progressed to Alzheimer’s disease within a three-year period. It was able to correctly identify individuals who went on to develop Alzheimer’s in 82% of cases and correctly identify those who didn’t in 81% of cases from cognitive tests and an MRI scan alone.

The algorithm was around three times more accurate at predicting the progression to Alzheimer’s than the current standard of care; that is, standard clinical markers (such as grey matter atrophy or cognitive scores) or clinical diagnosis. This shows that the model could significantly reduce misdiagnosis.

The model also allowed the researchers to stratify people with Alzheimer’s disease using data from each person’s first visit at the memory clinic into three groups: those whose symptoms would remain stable (around 50% of participants), those who would progress to Alzheimer’s slowly (around 35%) and those who would progress more rapidly (the remaining 15%). These predictions were validated when looking at follow-up data over 6 years. This is important as it could help identify those people at an early enough stage that they may benefit from new treatments, while also identifying those people who need close monitoring as their condition is likely to deteriorate rapidly.

Importantly, those 50% of people who have symptoms such as memory loss but remain stable, would be better directed to a different clinical pathway as their symptoms may be due to other causes rather than dementia, such as anxiety or depression.

Senior author Professor Zoe Kourtzi from the Department of Psychology at the University of Cambridge said: “We’ve created a tool which, despite using only data from cognitive tests and MRI scans, is much more sensitive than current approaches at predicting whether someone will progress from mild symptoms to Alzheimer’s – and if so, whether this progress will be fast or slow.

“This has the potential to significantly improve patient wellbeing, showing us which people need closest care, while removing the anxiety for those patients we predict will remain stable. At a time of intense pressure on healthcare resources, this will also help remove the need for unnecessary invasive and costly diagnostic tests.”

While the researchers tested the algorithm on data from a research cohort, it was validated using independent data that included almost 900 individuals who attended memory clinics in the UK and Singapore. In the UK, patients were recruited through the Quantiative MRI in NHS Memory Clinics Study (QMIN-MC) led by study co-author Dr Timothy Rittman at Cambridge University Hospitals NHS Trust and Cambridgeshire and Peterborough NHS Foundation Trusts (CPFT).

The researchers say this shows it should be applicable in a real-world patient, clinical setting.

Dr Ben Underwood, Honorary Consultant Psychiatrist at CPFT and assistant professor at the Department of Psychiatry, University of Cambridge, said: “Memory problems are common as we get older. In clinic I see how uncertainty about whether these might be the first signs of dementia can cause a lot of worry for people and their families, as well as being frustrating for doctors who would much prefer to give definitive answers. The fact that we might be able to reduce this uncertainty with information we already have is exciting and is likely to become even more important as new treatments emerge.”

Professor Kourtzi said: “AI models are only as good as the data they are trained on. To make sure ours has the potential to be adopted in a healthcare setting, we trained and tested it on routinely-collected data not just from research cohorts, but from patients in actual memory clinics. This shows it will be generalisable to a real-world setting.”

The team now hope to extend their model to other forms of dementia, such as vascular dementia and frontotemporal dementia, and using different types of data, such as markers from blood tests.

Professor Kourtzi added: “If we’re going to tackle the growing health challenge presented by dementia, we will need better tools for identifying and intervening at the earliest possible stage. Our vision is to scale up our AI tool to help clinicians assign the right person at the right time to the right diagnostic and treatment pathway. Our tool can help match the right patients to clinical trials, accelerating new drug discovery for disease modifying treatments.”

This work was in collaboration with a cross-disciplinary team including Professor Peter Tino at the University of Birmingham and Professor Christopher Chen at the National University of Singapore. It was funded by Wellcome, the Royal Society, Alzheimer’s Research UK, the Alzheimer’s Drug Discovery Foundation Diagnostics Accelerator, the Alan Turing Institute, and the National Institute for Health and Care Research Cambridge Biomedical Research Centre.

Reference
Lee, LY & Vaghari, D et al. Robust and interpretable AI-guided marker for early dementia prediction in real-world clinical settings. eClinMed; 12 July 2024; DOI: 10.1016/j.eclinm.2024.102725

Cambridge scientists have developed an artificially-intelligent tool capable of predicting in four cases out of five whether people with early signs of dementia will remain stable or develop Alzheimer’s disease.

We’ve created a tool which is much more sensitive than current approaches at predicting whether someone will progress from mild symptoms to Alzheimer’sZoe KourtziYuichiro Chino (Getty Images)Brain on molecular structure, circuitry, and programming code background


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Egging on vital research

Thu, 11/07/2024 - 09:08

Jenny Gallop uses frog egg extract to figure out key cellular processes - which has helped understand and potentially treat two rare genetic diseases in humans.

No evidence that England’s new ‘biodiversity boost’ planning policy will help birds or butterflies

Fri, 28/06/2024 - 05:01

From 2024, the UK’s Environment Act requires planning applications to demonstrate an overall biodiversity net gain of at least 10% as calculated using a new statutory biodiversity metric.

The researchers trialled the metric by using it to calculate the biodiversity value of 24 sites across England. These sites have all been monitored over the long-term, allowing the team to compare biodiversity species data with results from the metric.

Plant biodiversity at the sites matched values produced using the metric, but bird and butterfly biodiversity did not.

This means there’s no evidence that a 10% net biodiversity gain calculated using the statutory biodiversity metric will translate into real-life gains for birds and butterflies, without additional conservation management.

This is the first comprehensive study of the performance of Defra’s statutory biodiversity metric across England. The results are published today in the Journal of Applied Ecology.

Plants, birds and butterflies have been comprehensively surveyed in England over many years, and are used as indicators for the national state of nature.

The researchers say the metric must be improved to better capture the intricacies of the different species within an ecosystem.

“The statutory biodiversity metric is a really important opportunity, and has potential to direct a lot of money into biodiversity conservation from developers. It’s the responsibility of conservationists and policy makers to ensure that it provides a reliable indication of nature’s diversity,” said Dr Cicely Marshall in the University of Cambridge’s Department of Plant Sciences, first author of the paper.

She added: “At the moment the metric does capture plant diversity quite well, but it doesn’t reflect the intricacies of ecosystems – species like birds and butterflies use habitats in very different ways.”

The metric, created by the UK Government’s Department for Environment, Food and Rural Affairs (Defra), was introduced as part of the Environment Act with its legally binding agenda to deliver “the most ambitious environmental programme of any country on earth.” It scores the condition and distinctiveness of a piece of land to calculate its biodiversity value in standardised ‘biodiversity units.’

This allows developers to project biodiversity losses and gains across a site, so they can ensure the development achieves an overall minimum 10% biodiversity gain. Landowners can use the tool to calculate the biodiversity value of their land.

Marshall, who is also a Research Fellow at King’s College, Cambridge, said: “Many property developments have been very detrimental to nature in the past, and it’s exciting that England now has a requirement for developers to leave nature in a better state than they found it.

“We hope our study will contribute to improving the way nature’s value is calculated, to make the most of this valuable opportunity for nature recovery.”

The results of the study have been used to make recommendations to Defra and Natural England to help improve the metric.

The metric uses habitat as a proxy for biodiversity, scoring habitats’ intrinsic distinctiveness and current condition. Plans for biodiversity gain can involve replacing lost habitat with similar habitat - the researchers say that nature recovery could be improved if the particular species and habitats impacted by a development were also taken into account in this process.

There can be huge differences in biodiversity across habitats like croplands, for example, and these aren’t captured by the metric which assigns all cropland the same condition score. Conventional farms that regularly use artificial pesticides and herbicides have much lower biodiversity than organic farms that do not.

“There are great differences in the ecological value of cropland depending on how it’s managed, but the metric gives all cropland a low biodiversity score. It would be nice to see these differences reflected,” said Marshall.

The UK is committed to building 300,000 homes a year by mid-2020, so the net biodiversity gain requirement is expected to generate a market for biodiversity credits worth an estimated £135m-£274m annually – substantially increasing funding for nature conservation in England.

The research was funded by the Ecological Continuity Trust.

Reference: Marshall, C. 'England’s statutory biodiversity metric enhances plant, but not bird nor butterfly biodiversity'. Journal of Applied Ecology, June 2024. DOI: 10.1111/1365-2664.14697

A new legal requirement for developers to demonstrate a biodiversity boost in planning applications could make a more meaningful impact on nature recovery if improvements are made to the way nature’s value is calculated, say researchers at the University of Cambridge.

We hope our study will contribute to improving the way nature’s value is calculated, to make the most of this valuable opportunity for nature recovery.Cicely MarshallCicely MarshallResearchers assess woodland condition at Alice Holt Forest


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Simon Baron-Cohen wins MRC Millennium Medal for transformative research into autism and neurodiversity

Thu, 20/06/2024 - 08:00

Sir Simon Baron-Cohen is a Professor in the Departments of Psychology and Psychiatry at the University of Cambridge and Fellow at Trinity College. He is Director of the Autism Research Centre, which he set up in 1997. He has published over 750 peer reviewed scientific articles and has made contributions to many aspects of autism research. In 2021, he received a knighthood in the New Year’s Honours list for his services to autism.

One of his earliest MRC grants, in 1996, was to investigate if autism could be diagnosed in babies as young as 18 months old, and his team showed that it can. Ideally, an early diagnosis should lead to the right support, so that a child has the best opportunity to fulfil their potential.

Baron-Cohen has drawn attention to the reality that a lot of autistic people do not receive their diagnosis in early childhood. In fact, many are not diagnosed until late childhood, or even adulthood. This means they are left unsupported and feeling different, but with no explanation. As a result, autistic people can end up feeling like they do not fit in, and may experience exclusion or bullying by their peer group. They can feel ashamed when they’re not coping in a mainstream classroom.

He argues that the reason they are struggling is because the mainstream educational setting was designed for non-autistic people. This can lead to a gradual deterioration in their mental health. Many underachieve academically and only 15% of autistic adults are employed. Most worryingly, one in four autistic adults have planned or attempted suicide. He said “Autistic people are being failed by our society”.

In 2017 Baron-Cohen was invited by the United Nations to give a keynote lecture on Autism Acceptance Day. He described how autistic people are excluded from many basic human rights. These include the right to education, the right to health services, the right to dignity, and the right to employment.

In an effort to change this, Baron-Cohen created a charity called the Autism Centre of Excellence (ACE) at Cambridge. The charity is science-led and aims to put the science into the hands of policymakers, so there’s no delay in translating policy-relevant findings.

Alongside his applied research, Baron-Cohen’s team also conducts basic research. Autism starts prenatally and is partly but not completely genetic. For decades it was unclear what other factors might contribute to the cause of autism. Over the past 20 years Baron-Cohen made two big discoveries which have helped understand what causes autism. First, his team found elevated levels of prenatal androgens (sex hormones such as testosterone) in pregnancies that later resulted in autism. Second, they found that prenatal oestrogens (another group of sex hormones which are synthesised from androgens) levels were also elevated in pregnancies resulting in autism. 

Autism is an example of neurodiversity. Autistic individuals’ brains develop differently, from before birth. Some of these differences result in disability, for example, in social skills and communication. But others result in strengths or talents. For example, many autistic people have excellent memory for facts and excellent attention to detail. And many are strongly attracted to patterns. Baron-Cohen’s recent book The Pattern Seekers celebrates autistic people’s different minds. In many environments, such skills are assets. In his research group, he employs neurodivergent individuals.

Baron-Cohen will receive the prestigious medal, specially created by The Royal Mint, and will be listed amongst the most highly influential and impactful researchers in the UK. He will deliver a lecture about his research, and his achievements will be celebrated at an Awards Ceremony on 20 June 2024 in the Law Society where he will receive the medal.

On receiving the news that he was to be awarded the MRC Millennium Medal, Baron-Cohen said: “This is the result of team work and I am fortunate to be surrounded by a talented team of scientists. I hope this Medal shines a light on how autistic people need a lot more support, from the earliest point, to lead fulfilling lives.”

The UKRI Medical Research Council (MRC) in the UK will today present the MRC Millennium Medal 2023 to Professor Sir Simon Baron-Cohen, in recognition of his pioneering MRC-funded research into the prenatal sex steroid theory of autism, his establishment of the Autism Research Centre at the University of Cambridge, and his work in the public understanding of neurodiversity.

I hope this Medal shines a light on how autistic people need a lot more support, from the earliest point, to lead fulfilling livesSimon Baron-CohenBrian HarrisProfessor Sir Simon Baron-Cohen


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Discovery of ‘new rules of the immune system’ could improve treatment of inflammatory diseases, say scientists.

Tue, 18/06/2024 - 16:02

This overturns the traditional thinking that regulatory T cells exist as multiple specialist populations that are restricted to specific parts of the body. The finding has implications for the treatment of many different diseases – because almost all diseases and injuries trigger the body’s immune system.

Current anti-inflammatory drugs treat the whole body, rather than just the part needing treatment. The researchers say their findings mean it could be possible to shut down the body’s immune response and repair damage in any specific part of the body, without affecting the rest of it. This means that higher, more targeted doses of drugs could be used to treat disease – potentially with rapid results.

“We’ve uncovered new rules of the immune system. This ‘unified healer army’ can do everything - repair injured muscle, make your fat cells respond better to insulin, regrow hair follicles.  To think that we could use it in such an enormous range of diseases is fantastic: it’s got the potential to be used for almost everything,” said Professor Adrian Liston in the University of Cambridge’s Department of Pathology, senior author of the paper.

To reach this discovery, the researchers analysed the regulatory T cells present in 48 different tissues in the bodies of mice. This revealed that the cells are not specialised or static, but move through the body to where they’re needed. The results are published today in the journal Immunity.

“It's difficult to think of a disease, injury or infection that doesn’t involve some kind of immune response, and our finding really changes the way we could control this response,” said Liston.

He added: “Now that we know these regulatory T cells are present everywhere in the body, in principle we can start to make immune suppression and tissue regeneration treatments that are targeted against a single organ – a vast improvement on current treatments that are like hitting the body with a sledgehammer.”

Using a drug they have already designed, the researchers have shown - in mice - that it’s possible to attract regulatory T cells to a specific part of the body, increase their number, and activate them to turn off the immune response and promote healing in just one organ or tissue.

“By boosting the number of regulatory T cells in targeted areas of the body, we can help the body do a better job of repairing itself, or managing immune responses,” said Liston.

He added: “There are so many different diseases where we’d like to shut down an immune response and start a repair response, for example autoimmune diseases like multiple sclerosis, and even many infectious diseases.”

Most symptoms of infections such as COVID are not from the virus itself, but from the body’s immune system attacking the virus. Once the virus is past its peak, regulatory T cells should switch off the body’s immune response, but in some people the process isn’t very efficient and can result in ongoing problems. The new finding means it could be possible to use a drug to shut down the immune response in the patient’s lungs, while letting the immune system in the rest of the body continue to function normally.

In another example, people who receive organ transplants must take immuno-suppressant drugs for the rest of their lives to prevent organ rejection, because the body mounts a severe immune response against the transplanted organ. But this makes them highly vulnerable to infections. The new finding helps the design of new drugs to shut down the body’s immune response against only the transplanted organ but keep the rest of the body working normally, enabling the patient to lead a normal life.

Most white blood cells attack infections in the body by triggering an immune response. In contrast, regulatory T cells act like a ‘unified healer army’ whose purpose is to shut down this immune response once it has done its job - and repair the tissue damage caused by it.

The researchers are now fundraising to set up a spin-out company, with the aim of running clinical trials to test their findings in humans within the next few years.

The research was funded by the European Research Council (ERC), Wellcome, and the Biotechnology and Biological Sciences Research Council (BBSRC).

Reference: Liston, A. ‘The tissue-resident regulatory T cell pool is shaped by transient multi-tissue migration and a conserved residency program.’ Immunity, June 2024. DOI: 10.1016/j.immuni.2024.05.023

Scientists at the University of Cambridge have discovered that a type of white blood cell - called a regulatory T cell - exists as a single large population of cells that constantly move throughout the body looking for, and repairing, damaged tissue.

It's difficult to think of a disease, injury or infection that doesn’t involve some kind of immune response, and our finding really changes the way we could control this response.Adrian ListonLouisa Wood/ Babraham InstituteDr James Dooley, a senior author of the study, in the laboratoryIn brief
  • A single large population of healer cells, called regulatory T cells, is whizzing around our body - not multiple specialist populations restricted to specific parts of the body as previously thought.
  • These cells shut down inflammation and repair the collateral damage to cells caused after our immune system has responded to injury or illness.
  • Tests, in mice, of a drug developed by the researchers showed that regulatory T cells can be attracted to specific body parts, boosted in number, and activated to suppress immune response and rebuild tissue.
  • Current anti-inflammatory drugs used for this purpose suppress the body’s whole immune system, making patients more vulnerable to infection.
  • The discovery could lead to more targeted treatments, with fewer side-effects, for issues from lengthy COVID infections to autoimmune diseases like multiple sclerosis. Clinical trials in humans are now planned.


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Rainforest wildlife under threat as below-canopy temperatures rise

Mon, 03/06/2024 - 10:05

Crucial strongholds for biodiversity are under threat as temperatures are rising in tropical forests, the world’s most diverse terrestrial ecosystems, a new study reveals.

It has been long assumed that the forest subcanopy and understorey – where direct sunlight is reduced – would be insulated from the worst climate change impacts by the shielding effect of the forest canopy.

A new study, published today in the journal Nature Climate Change, used a microclimate model to examine temperatures beneath the rainforest canopy across the global tropics.

This showed that between 2005 and 2019, most of the world’s undisturbed tropical forests experienced climate conditions at least partially outside the range of historic conditions. Many areas had transitioned to almost entirely new temperature averages.

Until recently, temperatures beneath the canopy in rainforests have remained relatively stable, meaning that the wildlife that lives there has evolved within a narrow range of temperatures. This leaves it poorly adapted to deal with temperatures outside this range.

The study found pronounced shifts in climate regimes in a significant proportion of tropical forests, including globally important national parks, indigenous reserves, and large tracts of ecologically unfragmented areas.

Recent studies in largely undisturbed, or primary lowland tropical forests have found changes in species composition and significant declines in animal, insect, and plant populations. These changes are attributed to warming temperatures and are consistent with the findings of the new research.

"Tropical forests are the true powerhouses of global biodiversity, and the complex networks of species they contain underpin vast carbon stocks that help to mitigate climate change. A severe risk is that species are no longer able to survive within tropical forests as climate change intensifies, further exacerbating the global extinction crisis and degrading rainforest carbon stocks," said Professor David Edwards at the University of Cambridge’s Department of Plant Sciences, a study co-author.   

“Our study challenges the prevailing notion that tropical forest canopies will mitigate climate change impacts and it helps us understand how to prioritise conservation of these key areas of biodiversity effectively,” said Dr Alexander Lees, Reader in Biodiversity at Manchester Metropolitan University, a study co-author.

He added: “It is paramount that distant, wealth-related drivers of deforestation and degradation are addressed and that the future of those forests acting as climate refuges is secured by effecting legal protection, and by empowering indigenous communities.

“Notwithstanding the fundamental need for global carbon emission reductions, the prioritisation and protection of refugia and the restoration of highly threatened forests is vital to mitigate further damage to global tropical forest ecosystems.”

“Tropical forests, home to many of the world’s highly specialised species, are particularly sensitive to even small changes in climate,” said Dr Brittany Trew, Conservation Scientist for the Royal Society for the Protection of Birds, and lead author of the study.

She added: “Our research shows that climate change is already impacting vast areas of pristine tropical forest globally. To provide species with the best chance to adapt to these changes, these forests must be protected from additional human-induced threats.”

“The world's rainforests are incredible reservoirs of biodiversity, harbouring species that live in micro-environments in which climate conditions are generally stable. Thus, they are particularly sensitive to any changes brought about by climate change. It is vital that we take measures to safeguard these ecosystems from human pressures,” said Ilya Maclean, Professor of Global Change Biology at the University of Exeter and senior author of the study.

The study was made possible through a global collaboration that included researchers at Mountains of the Moon University, Uganda; Universidade Federal do Pará, Brazil; the Brazilian Agricultural Research Corporation and Universidad Nacional de San Antonio Abad del Cusco, Perú. It was funded by the National Science Foundation (NSF).

Reference: Trew, B.T. et al: ‘Novel temperatures are already widespread beneath the world’s tropical forest canopies.’ Nature Climate Change, June 2024. DOI: 10.1038/s41558-024-02031-0

Adapted from a press released by Manchester Metropolitan University

Assumptions that tropical forest canopies protect from the effects of climate change are unfounded, say researchers.

A severe risk is that species are no longer able to survive within tropical forests as climate change intensifies, further exacerbating the global extinction crisis and degrading rainforest carbon stocks.David EdwardsAlexander LeesRainforest on the south-eastern edge of Amazonia, Brazil


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Cuckoos evolve to look like their hosts - and form new species in the process

Thu, 30/05/2024 - 19:05

The theory of coevolution says that when closely interacting species drive evolutionary changes in each other this can lead to speciation - the evolution of new species. But until now, real-world evidence for this has been scarce.

Now a team of researchers has found evidence that coevolution is linked to speciation by studying the evolutionary arms race between cuckoos and the host birds they exploit.

Bronze-cuckoos lay their eggs in the nests of small songbirds. Soon after the cuckoo chick hatches, it pushes the host’s eggs out of the nest. The host not only loses all its own eggs, but spends several weeks rearing the cuckoo, which takes up valuable time when it could be breeding itself.

Each species of bronze-cuckoo closely matches the appearance of their host’s chicks, fooling the host parents into accepting the cuckoo.

The study shows how these interactions can cause new species to arise when a cuckoo species exploits several different hosts. If chicks of each host species have a distinct appearance, and hosts reject odd-looking nestlings, then the cuckoo species diverges into separate genetic lineages, each mimicking the chicks of its favoured host. These new lineages are the first sign of new species emerging.

The study is published today in the journal Science.

“This exciting new finding could potentially apply to any pairs of species that are in battle with each other. Just as we’ve seen with the cuckoo, the coevolutionary arms race could cause new species to emerge - and increase biodiversity on our planet,” said Professor Kilner in the University of Cambridge’s Department of Zoology, a co-author of the report.

The striking differences between the chicks of different bronze-cuckoo lineages correspond to subtle differences in the plumage and calls of the adults, which help males and females that specialise on the same host to recognise and pair with each other.

“Cuckoos are very costly to their hosts, so hosts have evolved the ability to recognise and eject cuckoo chicks from their nests,’’ said Professor Naomi Langmore at the Australian National University, Canberra, lead author of the study. 

She added: “Only the cuckoos that most resemble the host’s own chicks have any chance of escaping detection, so over many generations the cuckoo chicks have evolved to mimic the host chicks.”

The study revealed that coevolution is most likely to drive speciation when the cuckoos are very costly to their hosts, leading to a ‘coevolutionary arms race’ between host defences and cuckoo counter-adaptations.

A broad scale analysis across all cuckoo species found that those lineages that are most costly to their hosts have higher speciation rates than less costly cuckoo species and their non-parasitic relatives.

“This finding is significant in evolutionary biology, showing that coevolution between interacting species increases biodiversity by driving speciation,” said Dr Clare Holleley at the Australian National Wildlife Collection within CSIRO, Canberra, senior author of the report.

The study was made possible by the team’s breakthrough in extracting DNA from eggshells in historical collections, and sequencing it for genetic studies.

The researchers were then able to combine two decades of behavioural fieldwork with DNA analysis of specimens of eggs and birds held in museums and collections.

The study involved an international team of researchers at the University of Cambridge, Australian National University, CSIRO (Australia’s national science agency), and the University of Melbourne. It was funded by the Australian Research Council.

Reference: Langmore, N.E. et al: ‘Coevolution with hosts underpins speciation in brood-parasitic cuckoos.’ Science, May 2024. DOI: 10.1126/science.adj3210

Adapted from a press release by the Australian National University.

Two decades of cuckoo research have helped scientists to explain how battles between species can cause new species to arise

This exciting new finding could potentially apply to any pairs of species that are in battle with each other...the coevolutionary arms race could cause new species to emerge - and increase biodiversity on our planetRebecca KilnerMark LethleanMale wren (left) brings food to a cuckoo fledgling (right)


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YesLicence type: Attribution-Noncommerical

Earth’s earliest sea creatures drove evolution by stirring the water

Fri, 17/05/2024 - 16:01

A study involving the University of Cambridge has used virtual recreations of the earliest animal ecosystems, known as marine animal forests, to demonstrate the part they played in the evolution of our planet.

Using state-of-the-art computer simulations of fossils from the Ediacaran time period - approximately 565 million years ago - scientists discovered how these animals mixed the surrounding seawater. This may have affected the distribution of important resources such as food particles and could have increased local oxygen levels.

Through this process, the scientists think these early communities could have played a crucial role in shaping the initial emergence of large and complex organisms prior to a major evolutionary radiation of different forms of animal life, the so-called Cambrian ‘explosion’.

Over long periods of time, these changes might have allowed life forms to perform more complicated functions, like those associated with the evolution of new feeding and movement styles.

The study was led by the Natural History Museum and is published today in the journal Current Biology.

Dr Emily Mitchell at the University of Cambridge’s Department of Zoology, a co-author of the report, said: “It’s exciting to learn that the very first animals from 580 million years ago had a significant impact on their environment, despite not being able to move or swim. We’ve found they mixed up the water and enabled resources to spread more widely - potentially encouraging more evolution.”

Scientists know from modern marine environments that nutrients like food and oxygen are carried in seawater, and that animals can affect water flow in ways that influence the distribution of these resources.

To test how far back this process goes in Earth’s history, the team looked at some of the earliest examples of marine animal communities, known from rocks at Mistaken Point, Newfoundland, Canada. This world-famous fossil site perfectly preserves early life forms thanks to a cover of volcanic ash (sometimes referred to as an ‘Ediacaran Pompeii’).

Although some of these life forms look like plants, analysis of their anatomy and growth strongly suggests they are animals. Owing to the exceptional preservation of the fossils, the scientists could recreate digital models of key species, which were used as a basis for further computational analyses.

First author Dr Susana Gutarra, a Scientific Associate at the Natural History Museum, said: “We used ecological modelling and computer simulations to investigate how 3D virtual assemblages of Ediacaran life forms affected water flow. Our results showed that these communities were capable of ecological functions similar to those seen in present-day marine ecosystems.”

The study showed that one of the most important Ediacaran organisms for disrupting the flow of water was the cabbage-shaped animal Bradgatia, named after Bradgate Park in England. The Bradgatia from Mistaken Point are among some of the largest fossils known from this site, reaching diameters of over 50 centimetres.

Through their influence on the water around them, the scientists believe these Ediacaran organisms might have been capable of enhancing local oxygen concentrations. This biological mixing might also have had repercussions for the wider environment, possibly making other areas of the sea floor more habitable and perhaps even driving evolutionary innovation.

Dr Imran Rahman, lead author and Principal Researcher at the Natural History Museum, said: “The approach we’ve developed to study Ediacaran fossil communities is entirely new in palaeontology, providing us with a powerful tool for studying how past and present marine ecosystems might shape and influence their environment.”

The research was funded by the UK Natural Environment Research Council and the US National Science Foundation.

Reference: Gutarra-Diaz, S.“Ediacaran marine animal forests and the ventilation of the oceans.” May 2024, Current Biology. DOI: 10.1016/j.cub.2024.04.059

Adapted from a press release by the Natural History Museum

3D reconstructions suggest that simple marine animals living over 560 million years ago drove the emergence of more complex life by mixing the seawater around them

It’s exciting to learn that the very first animals from 580 million years ago had a significant impact on their environment, despite not being able to move or swim.Emily MitchellHugo Salais, Metazoa StudioArtistic recreation of the marine animal forest


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YesLicence type: Attribution-Noncommerical

Nine Cambridge scientists elected as Fellows of the Royal Society 2024

Thu, 16/05/2024 - 09:51

The Royal Society is a self-governing Fellowship of many of the world’s most distinguished scientists drawn from all areas of science, engineering and medicine.

The Society’s fundamental purpose, as it has been since its foundation in 1660, is to recognise, promote and support excellence in science and to encourage the development and use of science for the benefit of humanity.

This year, over 90 researchers, innovators and communicators from around the world have been elected as Fellows of the Royal Society for their substantial contribution to the advancement of science. Nine of these are from the University of Cambridge.

Sir Adrian Smith, President of the Royal Society said: “I am pleased to welcome such an outstanding group into the Fellowship of the Royal Society.

“This new cohort have already made significant contributions to our understanding of the world around us and continue to push the boundaries of possibility in academic research and industry.

“From visualising the sharp rise in global temperatures since the industrial revolution to leading the response to the Covid-19 pandemic, their diverse range of expertise is furthering human understanding and helping to address some of our greatest challenges. It is an honour to have them join the Fellowship.”

The Fellows and Foreign Members join the ranks of Stephen Hawking, Isaac Newton, Charles Darwin, Albert Einstein, Lise Meitner, Subrahmanyan Chandrasekhar and Dorothy Hodgkin.

The new Cambridge fellows are: 
 

Professor Sir John Aston Kt FRS

Aston is the Harding Professor of Statistics in Public Life at the Statistical Laboratory, Department of Pure Mathematics and Mathematical Statistics, where he develops techniques for public policy and improves the use of quantitative methods in public policy debates.

From 2017 to 2020 he was the Chief Scientific Adviser to the Home Office, providing statistical and scientific advice to ministers and officials, and was involved in the UK’s response to the Covid pandemic. He was knighted in 2021 for services to statistics and public policymaking, and is a Fellow of Churchill College.
 

Professor Sarah-Jayne Blakemore FBA FMedSci FRS

Blakemore is the Professor of Psychology and Cognitive Neuroscience, Department of Psychology, and leader of the Developmental Cognitive Neuroscience Group. Her research focuses on the development of social cognition and decision making in the human adolescent brain, and adolescent mental health. 

Blakemore has been awarded several national and international prizes for her research, and is a Fellow of the British Academy, the American Association of Psychological Science and the Academy of Medical Sciences. 
 

Professor Patrick Chinnery FMedSci FRS

Chinnery is Professor of Neurology and head of the University’s Department of Clinical Neurosciences, and a Fellow of Gonville & Caius College. He was appointed Executive Chair of the Medical Research Council last year, having previously been MRC Clinical Director since 2019.

His principal research is the role of mitochondria in human disease and developing new treatments for mitochondrial disorders. Chinnery is a Wellcome Principal Research Fellow with a lab based in the MRC Mitochondrial Biology Unit and jointly chairs the NIHR BioResource for Translational Research in Common and Rare Diseases. He is a Fellow of the Academy of Medical Sciences.


Professor Rebecca Fitzgerald FMedSci FRS

Fitzgerald is Professor of Cancer Prevention in the Department of Oncology and the inaugural Director of the University’s new Early Cancer Institute, which launched in 2022. She is a Fellow of Trinity College.

Her pioneering work to devise a first-in-class, non-endoscopic capsule sponge test for identifying individuals at high risk for oesophageal cancer has won numerous prizes, including the Westminster Medal, and this test is now being rolled out in the NHS and beyond by her spin-out Cyted Ltd.


Professor David Hodell FRS

Hodell is the Woodwardian Professor of Geology and Director of the Godwin Laboratory for Palaeoclimate Research in the Department of Earth Sciences, and a Fellow of Clare College.

A marine geologist and paleoclimatologist, his research focuses on high-resolution paleoclimate records from marine and lake sediments, as well as mineral deposits, to better understand past climate dynamics. Hodell is a fellow of the American Geophysical Union and the American Association for the Advancement of Science. He has received the Milutin Milankovic Medal.


Professor Eric Lauga FRS

Lauga is Professor of Applied Mathematics in the Department of Applied Mathematics and Theoretical Physics, where his research is in fluid mechanics, biophysics and soft matter. Lauga is the author, or co-author, of over 180 publications and currently serves as Associate Editor for the journal Physical Review Fluids.

He is a recipient of three awards from the American Physical Society: the Andreas Acrivos Dissertation Award in Fluid Dynamics, the François Frenkiel Award for Fluid Mechanics and the Early Career Award for Soft Matter Research. He is a Fellow of the American Physical Society and of Trinity College.


Professor George Malliaras FRS

Malliaras is the Prince Philip Professor of Technology in the Department of Engineering, where he leads a group that works on the development and translation of implantable and wearable devices that interface with electrically active tissues, with applications in neurological disorders and brain cancer.

Research conducted by Malliaras has received awards from the European Academy of Sciences, the New York Academy of Sciences, and the US National Science Foundation among others. He is a Fellow of the Materials Research Society and of the Royal Society of Chemistry.


Professor Oscar Randal-Williams FRS

Randal-Williams is the Sadleirian Professor of Pure Mathematics in the Department of Pure Mathematics and Mathematical Statistics.

He has received the Whitehead Prize from the London Mathematical Society, a Philip Leverhulme Prize, the Oberwolfach Prize, the Dannie Heineman Prize of the Göttingen Academy of Sciences and Humanities, and was jointly awarded the Clay Research Award.

Randal-Williams is one of two managing editors of the Proceedings of the London Mathematical Society, and an editor of the Journal of Topology.


Professor Mihaela van der Schaar FRS

Van der Schaar is the John Humphrey Plummer Professor of Machine Learning, Artificial Intelligence and Medicine in the Departments of Applied Mathematics and Theoretical Physics, Engineering and Medicine.

She is the founder and director of the Cambridge Centre for AI in Medicine, and a Fellow at The Alan Turing Institute. Her work has received numerous awards, including the Oon Prize on Preventative Medicine, a National Science Foundation CAREER Award, and the IEEE Darlington Award.

Van der Schaar is credited as inventor on 35 US patents, and has made over 45 contributions to international standards for which she received three ISO Awards. In 2019, a Nesta report declared her the most-cited female AI researcher in the UK.


 

Nine outstanding Cambridge researchers have been elected as Fellows of the Royal Society, the UK’s national academy of sciences and the oldest science academy in continuous existence.

Royal SocietyThe Royal Society in central London


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Yes

Birth by C-section more than doubles odds of measles vaccine failure

Mon, 13/05/2024 - 10:01

A study by the University of Cambridge, UK, and Fudan University, China, has found that a single dose of the measles jab is up to 2.6 times more likely to be completely ineffective in children born by C-section, compared to those born naturally.

Failure of the vaccine means that the child’s immune system does not produce antibodies to fight against measles infection, so they remain susceptible to the disease.

A second measles jab was found to induce a robust immunity against measles in C-section children.

Measles is a highly infectious disease, and even low vaccine failure rates can significantly increase the risk of an outbreak.

A potential reason for this effect is linked to the development of the infant’s gut microbiome – the vast collection of microbes that naturally live inside the gut. Other studies have shown that vaginal birth transfers a greater variety of microbes from mother to baby, which can boost the immune system.

“We’ve discovered that the way we’re born - either by C-section or natural birth - has long-term consequences on our immunity to diseases as we grow up,” said Professor Henrik Salje in the University of Cambridge​’s Department of Genetics, joint senior author of the report.

He added: “We know that a lot of children don't end up having their second measles jab, which is dangerous for them as individuals and for the wider population.

“Infants born by C-section are the ones we really want to be following up to make sure they get their second measles jab, because their first jab is much more likely to fail.”

The results are published today in the journal Nature Microbiology.

At least 95% of the population needs to be fully vaccinated to keep measles under control but the UK is well below this, despite the Measles, Mumps and Rubella (MMR) vaccine being available through the NHS Routine Childhood Immunisation Programme.

An increasing number of women around the world are choosing to give birth by caesarean section: in the UK a third of all births are by C-section, in Brazil and Turkey over half of all children are born this way.

“With a C-section birth, children aren’t exposed to the mother’s microbiome in the same way as with a vaginal birth. We think this means they take longer to catch up in developing their gut microbiome, and with it, the ability of the immune system to be primed by vaccines against diseases including measles,” said Salje.

To get their results, the researchers used data from previous studies of over 1,500 children in Hunan, China, which included blood samples taken every few weeks from birth to the age of 12. This allowed them to see how levels of measles antibodies in the blood change over the first few years of life, including following vaccination.

They found that 12% of children born via caesarean section had no immune response to their first measles vaccination, as compared to 5% of children born by vaginal delivery. This means that many of the children born by C-section did still mount an immune response following their first vaccination.

Two doses of the measles jab are needed for the body to mount a long-lasting immune response and protect against measles. According to the World Health Organisation, in 2022 only 83% of the world's children had received one dose of measles vaccine by their first birthday – the lowest since 2008.

Salje said: “Vaccine hesitancy is really problematic, and measles is top of the list of diseases we’re worried about because it’s so infectious.”

Measles is one of the world’s most contagious diseases, spread by coughs and sneezes. It starts with cold-like symptoms and a rash, and can lead to serious complications including blindness, seizures, and death.

Before the measles vaccine was introduced in 1963, there were major measles epidemics every few years causing an estimated 2.6 million deaths each year.

The research was funded by the National Natural Science Foundation of China.

Reference

Wang, W. et al: ‘Dynamics of measles immunity from birth and following vaccination.’ Nature Microbiology, 13 May 2024. DOI: 10.1038/s41564-024-01694-x

Researchers say it is vital that children born by caesarean section receive two doses of the measles vaccine for robust protection against the disease.

CHBD / E+ / Getty Images Very sick 5 year old little boy fighting measles infection, boy is laying in bed under the blanket with a agonizing expression, boy is covered with rash caused by virus.


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Yes

New vaccine effective against coronaviruses that haven’t even emerged yet

Mon, 06/05/2024 - 10:00

This is a new approach to vaccine development called ‘proactive vaccinology’, where scientists build a vaccine before the disease-causing pathogen even emerges.

The new vaccine works by training the body’s immune system to recognise specific regions of eight different coronaviruses, including SARS-CoV-1, SARS-CoV-2, and several that are currently circulating in bats and have potential to jump to humans and cause a pandemic.

Key to its effectiveness is that the specific virus regions the vaccine targets also appear in many related coronaviruses. By training the immune system to attack these regions, it gives protection against other coronaviruses not represented in the vaccine – including ones that haven’t even been identified yet.

For example, the new vaccine does not include the SARS-CoV-1 coronavirus, which caused the 2003 SARS outbreak, yet it still induces an immune response to that virus.

“Our focus is to create a vaccine that will protect us against the next coronavirus pandemic, and have it ready before the pandemic has even started,” said Rory Hills, a graduate researcher in the University of Cambridge’s Department of Pharmacology and first author of the report.

He added: “We’ve created a vaccine that provides protection against a broad range of different coronaviruses – including ones we don’t even know about yet.”

The results are published today in the journal Nature Nanotechnology.

“We don’t have to wait for new coronaviruses to emerge. We know enough about coronaviruses, and different immune responses to them, that we can get going with building protective vaccines against unknown coronaviruses now,” said Professor Mark Howarth in the University of Cambridge’s Department of Pharmacology, senior author of the report.

He added: “Scientists did a great job in quickly producing an extremely effective COVID vaccine during the last pandemic, but the world still had a massive crisis with a huge number of deaths. We need to work out how we can do even better than that in the future, and a powerful component of that is starting to build the vaccines in advance.”

 

 

The new ‘Quartet Nanocage’ vaccine is based on a structure called a nanoparticle – a ball of proteins held together by incredibly strong interactions. Chains of different viral antigens are attached to this nanoparticle using a novel ‘protein superglue’. Multiple antigens are included in these chains, which trains the immune system to target specific regions shared across a broad range of coronaviruses.

This study demonstrated that the new vaccine raises a broad immune response, even in mice that were pre-immunised with SARS-CoV-2.

The new vaccine is much simpler in design than other broadly protective vaccines currently in development, which the researchers say should accelerate its route into clinical trials.

The underlying technology they have developed also has potential for use in vaccine development to protect against many other health challenges.

The work involved a collaboration between scientists at the University of Cambridge, the University of Oxford, and Caltech. It improves on previous work, by the Oxford and Caltech groups, to develop a novel all-in-one vaccine against coronavirus threats. The vaccine developed by Oxford and Caltech should enter Phase 1 clinical trials in early 2025, but its complex nature makes it challenging to manufacture which could limit large-scale production.

Conventional vaccines include a single antigen to train the immune system to target a single specific virus. This may not protect against a diverse range of existing coronaviruses, or against pathogens that are newly emerging.

The research was funded by the Biotechnology and Biological Sciences Research Council.

Reference: Hills, R.A. et al: ‘Proactive vaccination using multiviral Quartet Nanocages to elicit broad anti-coronavirus responses.’ Nature Nanotechnology, May 2024. DOI: 10.1038/s41565-024-01655-9

Researchers have developed a new vaccine technology that has been shown in mice to provide protection against a broad range of coronaviruses with potential for future disease outbreaks - including ones we don’t even know about

Our focus is to create a vaccine that will protect us against the next coronavirus pandemic, and have it ready before the pandemic has even started.Rory HillsStefan Cristian Cioata on GettySyringe and vaccine bottle


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YesLicence type: Attribution-Noncommerical

Four Cambridge researchers awarded prestigious European Research Council Advanced Grants

Thu, 11/04/2024 - 11:01

The European Research Council (ERC) has announced today the award of 255 Advanced Grants to outstanding research leaders across Europe, as part of the EU’s Horizon Europe programme. Four University of Cambridge researchers are amongst those to receive this prestigious and competitive funding.

The University of Cambridge’s grant awardees are:

Dr Albert Guillén i Fàbregas in the Department of Engineering for his project Scaling and Concentration Laws in Information Theory.

Fàbregas, who has previously received ERC Starting, Consolidator and Proof of Concept Grants, said: “I am truly delighted with the news that the ERC will continue to fund my research in information theory, which studies the mathematical aspects of data transmission and data compression.

“This project will broaden the theory to study arbitrary scaling laws of the number of messages to transmit or compress."

Professor Beverley Glover in the Department of Plant Sciences and Director of Cambridge University Botanic Garden, for her project Convergent evolution of floral patterning through alternative optimisation of mechanical parameter space.

Glover said: “This funding will enable us to explore how iridescent colour evolved repeatedly in different flowers. We think it will shed new light on evolution itself, as we think about the development of iridescence structure from a mechanical perspective, focusing on the forces acting as a petal grows and the mechanical properties of the petal tissue.

“It's only possible for me to do this work because of the amazing living collection at Cambridge University Botanic Garden, and I'm thrilled that the ERC is keen to support it."

Professor Ian Henderson in the Department of Plant Sciences for his project Evolution of the Arabidopsis Pancentromere.

Henderson said: “This project seeks to investigate enigmatic regions of the genome called the centromeres, using the model plant Arabidopsis. These regions play a deeply conserved role in cell division yet paradoxically are fast evolving.

“I am highly honoured and excited to be awarded an ERC Advanced grant. The advent of long-read sequencing technology makes addressing these questions timely. The ERC’s long-term support will allow us to capitalise on these advances, build new collaborations, and train postdoctoral researchers.”

Professor Paul Lane in the Department of Archaeology, for his project Landscape Historical Ecology and Archaeology of Ancient Pastoral Societies in Kenya.

Lane said: “Pastoralism has been an extraordinarily resilient livelihood strategy across Africa. This project provides an excellent opportunity to reconstruct how East Africa’s pastoralists responded to significant climate change in the past, and to draw lessons from these adaptations for responding to contemporary climate crises in a region that is witnessing heightened water scarcity and loss of access to critically important grazing lands.”

“This project will allow us to utilise the department’s world-leading archaeological science laboratories and expertise to answer crucial questions about past patterns of mobility, dietary diversity, climatic regimes and food security among East African pastoralists over the last fifteen hundred years. This has never been attempted before for this time period.”

Professor Anne Ferguson-Smith, Pro-Vice Chancellor for Research at the University of Cambridge said: “Many congratulations to Albert, Beverley, Ian and Paul on receiving these prestigious and highly competitive awards. It is fantastic that their ambitious, cutting-edge research will be supported by the European Research Council, marking them as outstanding European research leaders.

“Now that the UK is an associated country to Horizon Europe I encourage other Cambridge researchers to also consider applying to the ERC and other Horizon Europe programmes.”

President of the European Research Council Professor Maria Leptin said: “Congratulations to the 255 researchers who will receive grants to follow their scientific instinct in this new funding round. I am particularly happy to see more mid-career scientists amongst the Advanced Grant winners this time. I hope that it will encourage more researchers at this career stage to apply for these grants.”

The ERC is the premier European funding organisation for excellent frontier research. The 255 ERC Advanced Grants, totalling €652 million, support cutting-edge research in a wide range of fields from medicine and physics to social sciences and humanities.

The European Commission and the UK Government have reached an agreement on the association of the UK to Horizon Europe, which applies for calls for proposals implementing the 2024 budget and onwards.

The ERC Advanced Grants target established, leading researchers with a proven track-record of significant achievements. In recent years, there has been a steady rise in mid-career researchers (12-17 years post-PhD), who have been successful in the Advanced Grants competitions, with 18% securing grants in this latest round.

The funding provides leading senior researchers with the opportunity to pursue ambitious, curiosity-driven projects that could lead to major scientific breakthroughs.

Many congratulations to Albert, Beverley, Ian and Paul... It is fantastic that their ambitious, cutting-edge research will be supported by the European Research Council, marking them as outstanding European research leaders.Anne Ferguson-Smith


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Yes

Pork labelling schemes ‘not helpful’ in making informed buying choices, say researchers

Thu, 11/04/2024 - 10:27

Researchers have evaluated different types of pig farming – including woodland, organic, free range, RSPCA assured, and Red Tractor certified, to assess each systems’ impact across four areas: land use (representing biodiversity loss), greenhouse gas emissions, antibiotics use and animal welfare. Their study concludes that none of the farm types performed consistently well across all four areas – a finding that has important implications for increasingly climate conscious consumers, as well as farmers themselves.

However, there were individual farms that did perform well in all domains, including an indoor Red Tractor farm, an outdoor bred, indoor finished RSPCA assured farm and fully outdoor woodland farm. “Outliers like these show that trade-offs are not inevitable,” said lead author Dr Harriet Bartlett, Research Associate at the University of Oxford's Smith School of Enterprise and the Environment, who was formerly at the University of Cambridge.  

“Somewhat unexpectedly we found that a handful of farms perform far better than average across all four of our environmental and welfare measures,” added senior author Andrew Balmford, Professor of Conservation Science at the University of Cambridge. However, none of the current label or assurance schemes predicted which farms these would be.

“The way we classify farm types and label pork isn’t helpful for making informed decisions when it comes to buying more sustainable meat. Even more importantly, we aren’t rewarding and incentivising the best-performing farmers. Instead of focusing on farm types or practices, we need to focus on meaningful outcomes for people, the planet and the pigs – and assess, and reward farms based on these,” said Bartlett.

The findings also show that common assumptions around food labelling can be misplaced. For instance, Organic farming systems, which consumers might see as climate and environmentally friendly, have on average three times the CO2 output per kg of meat of more intensive Red Tractor or RSPCA assured systems and four times the land use. However, these same systems use on average almost 90% fewer antibiotic medicines, and result in improved animal welfare compared with production from Red tractor or RSPCA assured systems.

The way we classify livestock farms must be improved, Bartlett says, because livestock production is growing rapidly, especially pork production, which has quadrupled in the past 50 years and already accounts for 9% of greenhouse gas emissions from livestock. Pig farming also uses more antibiotics than any other livestock sector, and 8.5% of all arable land.

“Our findings show that mitigating the environmental impacts of livestock farming isn’t a case of saying which farm type is the best,” said Bartlett. “There is substantial scope for improvement within types, and our current means of classification is not identifying the best farms for the planet and animals overall. Instead, we need to identify farms that successfully limit their impacts across all areas of societal concern, and understand, promote and incentivise their practises.”

The study reached its conclusions using data from 74 UK and 17 Brazilian breed-to-finish systems, each made up of 1-3 farms and representing the annual production of over 1.2 million pigs. It is published today in the journal Nature Food.

“To the best of our knowledge, our dataset covers by far the largest and most diverse sample of pig production systems examined in any single study,” said Bartlett.

James Wood, Professor of Equine and Farm Animal Science at the University of Cambridge, commented: “This important study identifies a key need to clarify what different farm labels should indicate to consumers; there is a pressing need to extend this work into other farming sectors. It also clearly demonstrates the critical importance that individual farmers play in promoting best practice across all farming systems.”

Trade-offs in the externalities of pig production are not inevitable was authored by academics at the University of Oxford, University of Cambridge and the University of São Paulo.

The research was funded by the Biotechnology and Biological Sciences Research Council (BBSRC).

Reference: Bartlett, H.,‘Trade-offs in the externalities of pig production are not inevitable.’ Nature Food, April 2024. DOI: 10.1038/s43016-024-00921-2

Adapted from a press release by the University of Oxford.

Farmers don’t have to choose between lowering environmental impact and improving welfare for their pigs, a new study has found: it is possible to do both. But this is not reflected in the current food labelling schemes relied on by consumers.

The way we classify farm types and label pork isn’t helpful for making informed decisions when it comes to buying more sustainable meat.Harriet BartlettCharity Burggraaf/ GettyTwo pigs on a farm


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