2022
Steindel, M., Orsine de Almeida, I., Strawbridge, S., Chernova, V., Holcman, D., Ponjavic, A. and Basu, S., 2022. Studying the Dynamics of Chromatin-Binding Proteins in Mammalian Cells Using Single-Molecule Localization Microscopy. Methods Mol Biol, v. 2476
Doi: http://doi.org/10.1007/978-1-0716-2221-6_16
Novo, CL., Wong, EV., Hockings, C., Poudel, C., Sheekey, E., Wiese, M., Okkenhaug, H., Boulton, SJ., Basu, S., Walker, S., Kaminski Schierle, GS., Narlikar, GJ. and Rugg-Gunn, PJ., 2022. Satellite repeat transcripts modulate heterochromatin condensates and safeguard chromosome stability in mouse embryonic stem cells. Nat Commun, v. 13
Doi: http://doi.org/10.1038/s41467-022-31198-3
Pal, D., Patel, M., Boulet, F., Sundarraj, J., Grant, O., Branco, M., Basu, S., Santos, S., Zabet, NR., Scaffidi, P. and Pradeepa, M., 2022. H4K16ac activates the transcription of transposable elements and contributes to their cis-regulatory function
Doi: 10.1101/2022.04.29.488986
2020
Basu, S., Shukron, O., Ponjavic, A., Parruto, P., Boucher, W., Zhang, W., Reynolds, N., Lando, D., Shah, D., Sober, LH., Jartseva, A., Ragheb, R., Cramard, J., Floyd, R., Brown, G., Gor, K., Balmer, J., Drury, TA., Carr, AR., Needham, L-M., Aubert, A., Communie, G., Morey, L., Blanco, E., Barber, MA., Mohorianu, I., Bartke, T., Di Croce, L., Berger, I., Schaffitzel, C., Lee, SF., Stevens, TJ., Klenerman, D., Hendrich, BD., Holcman, D. and Laue, ED., 2020. Live-cell 3D single-molecule tracking reveals how NuRD modulates enhancer dynamics BioRxiv,
Doi: 10.1101/2020.04.03.003178
Novo, CL., Wong, E., Hockings, C., Poudel, C., Sheekey, E., Walker, S., Schierle, GK., Narlikar, G. and Rugg-Gunn, P., 2020. Satellite repeat transcripts modulate heterochromatin condensates and safeguard chromosome stability in mouse embryonic stem cells
Doi: 10.1101/2020.06.08.139642
2017
Stevens, TJ., Lando, D., Basu, S., Atkinson, LP., Cao, Y., Lee, SF., Leeb, M., Wohlfahrt, KJ., Boucher, W., O’Shaughnessy-Kirwan, A., Cramard, J., Faure, AJ., Ralser, M., Blanco, E., Morey, L., Sanso, M., Palayret, MGS., Lehner, B., Di Croce, L., Wutz, A., Hendrich, B., Klenerman, D. and Laue, ED., 2017. 3D structure of individual mammalian genomes studied by single cell Hi-C Nature,
Doi: 10.1038/nature21429
Carr, AR., Ponjavic, A., Basu, S., McColl, J., Santos, AM., Davis, S., Laue, ED., Klenerman, D. and Lee, SF., 2017. Three-Dimensional Super-Resolution in Eukaryotic Cells Using the Double-Helix Point Spread Function Biophysical Journal, v. 112
Doi: 10.1016/j.bpj.2017.02.023
2016
Zhou, Y., Basu, S., Laue, E. and Seshia, AA., 2016. Single cell studies of mouse embryonic stem cell (mESC) differentiation by electrical impedance measurements in a microfluidic device. Biosens Bioelectron, v. 81
Doi: 10.1016/j.bios.2016.02.069
Zhou, Y., Basu, S., Wohlfahrt, KJ., Lee, SF., Klenerman, D., Laue, ED. and Seshia, AA., 2016. A microfluidic platform for trapping, releasing and super-resolution imaging of single cells. Sens Actuators B Chem, v. 232
Doi: 10.1016/j.snb.2016.03.131
Zhang, W., Aubert, A., Gomez de Segura, JM., Karuppasamy, M., Basu, S., Murthy, A., Diamante, A., Drury, TA., Balmer, J., Cramard, J., Watson, AA., Lando, D., Lee, SF., Palayret, M., Kloet, S., Smits, A., Deery, M., Vermeulen, M., Hendrich, B., Klenerman, D., Schaffitzel, C., Berger, I. and Laue, ED., 2016. The Nucleosome Remodeling and Deacetylase Complex NuRD Is Built from Preformed Catalytically Active Sub-modules Journal of Molecular Biology, v. 428
Doi: 10.1016/j.jmb.2016.04.025
Needham, L-M., Basu, S., Taylor, E., Laue, ED., Klenerman, D., Lando, D. and Lee, SF., 2016. Improved Photo Physical Properties of mEos3 for Single Molecule Tracking BIOPHYSICAL JOURNAL, v. 110
Doi: 10.1016/j.bpj.2015.11.2596
Basu, S., Tan, YL., Taylor, EJR., Laue, ED. and Lee, SF., 2016. Studying the Dynamics of Chromatin-Binding Proteins in Mammalian Cells Using Single-Molecule Localisation Microscopy. Methods Mol Biol, v. 1431
Doi: 10.1007/978-1-4939-3631-1_17
Zhou, Y., Basu, S., Laue, ED. and Seshia, AA., 2016. Dynamic monitoring of single cell lysis in an impedance-based microfluidic device. Biomed Microdevices, v. 18
Doi: 10.1007/s10544-016-0081-z
2015
Palayret, M., Armes, H., Basu, S., Watson, AT., Herbert, A., Lando, D., Etheridge, TJ., Endesfelder, U., Heilemann, M., Laue, E., Carr, AM., Klenerman, D. and Lee, SF., 2015. Virtual-'light-sheet' single-molecule localisation microscopy enables quantitative optical sectioning for super-resolution imaging. PLoS One, v. 10
Doi: 10.1371/journal.pone.0125438
Lu, F-K., Basu, S., Igras, V., Hoang, MP., Ji, M., Fu, D., Holtom, GR., Neel, VA., Freudiger, CW., Fisher, DE. and Xie, XS., 2015. Label-free DNA imaging in vivo with stimulated Raman scattering microscopy. Proc Natl Acad Sci U S A, v. 112
Doi: 10.1073/pnas.1515121112
2013
Gebhardt, JCM., Suter, DM., Roy, R., Zhao, ZW., Chapman, AR., Basu, S., Maniatis, T. and Xie, XS., 2013. Single-molecule imaging of transcription factor binding to DNA in live mammalian cells. Nat Methods, v. 10
Doi: http://doi.org/10.1038/nmeth.2411
Gebhardt, JCM., Suter, DM., Roy, R., Zhao, ZW., Chapman, AR., Basu, S., Maniatis, T. and Xie, XS., 2013. Single-molecule imaging of transcription factor binding to DNA in live mammalian cells Nature Methods, v. 10
Doi: http://doi.org/10.1038/nmeth.2411
2012
Zhang, X., Roeffaers, MBJ., Basu, S., Daniele, JR., Fu, D., Freudiger, CW., Holtom, GR. and Xie, XS., 2012. Label-free live-cell imaging of nucleic acids using stimulated Raman scattering microscopy. Chemphyschem, v. 13
Doi: http://doi.org/10.1002/cphc.201100890
2008
Nolan, ME., Aranda, V., Lee, S., Lakshmi, B., Basu, S., Allred, DC. and Muthuswamy, SK., 2008. The polarity protein Par6 induces cell proliferation and is overexpressed in breast cancer. Cancer Res, v. 68
Doi: http://doi.org/10.1158/0008-5472.CAN-07-6567
Laue, ED., Lando, D., Basu, S., Stevens, T., Riddell, A., Wohlfahrt, K., Cao, Y., Boucher, W., Leeb, M., Atkinson, L., Lee, S., Hendrich, B. and Klenerman, D., Combining fluorescence imaging with Hi-C to study 3D genome architecture of the same single cell Nature Protocols,
Laue, ED., Lando, D., Stevens, T. and Basu, S., Calculation of 3D genome structures for comparison of chromosome conformation capture experiments with microscopy: An evaluation of single-cell Hi-C protocols Nucleus,
Laue, ED., Basu, S., Needham, LM., Lando, D., Taylor, EJR., Wohlfahrt, K., Shah, D., Boucher, W., Tan, YL., Bates, LE., Tkachenko, O., Cramard, J., Lagerholm, BC., Eggeling, C., Hendrich, B., Klenerman, D. and Lee, SF., FRET-enhanced photostability allows improved single-molecule tracking of proteins and protein complexes in live mammalian cells Nature Communications,
Wiese, M., Bannister, A., Basu, S., Boucher, W., Wohlfahrt, K., Christophorou, M., Nielsen, M., Klenerman, D., Laue, E. and Kouzarides, T., Citrullination of HP1γ 1 chromodomain affects association to chromatin Epigenetics and Chromatin,
Pal, D., Patel, M., Boulet, F., Sundarraj, J., Grant, OA., Branco, MR., Basu, S., Santos, SDM., Zabet, NR., Scaffidi, P. and Pradeepa, MM., H4K16ac activates the transcription of transposable elements and contributes to their cis-regulatory function Nature Structural and Molecular Biology,
Doi: 10.1038/s41594-023-01016-5
