2023
Han, Y., Micklem, G. and Kim, SY., 2023. Transcriptional landscape of oncogene-induced senescence: a machine learning-based meta-analytic approach. Ageing Res Rev, v. 85
Doi: 10.1016/j.arr.2023.101849
2019
Bean, DM., Heimbach, J., Ficorella, L., Micklem, G., Oliver, SG. and Favrin, G., 2019. Correction: esyN: Network Building, Sharing and Publishing. PLoS One, v. 14
Doi: http://doi.org/10.1371/journal.pone.0204058
Kyritsis, KA., Wang, B., Sullivan, J., Lyne, R. and Micklem, G., 2019. InterMineR: an R package for InterMine databases. Bioinformatics,
Doi: http://doi.org/10.1093/bioinformatics/btz039
Katayama, T., Kawashima, S., Micklem, G., Kawano, S., Kim, JD., Kocbek, S., Okamoto, S., Wang, Y., Wu, H., Yamaguchi, A., Yamamoto, Y., Antezana, E., Aoki-Kinoshita, KF., Arakawa, K., Banno, M., Baran, J., Bolleman, JT., Bonnal, RJP., Bono, H., Fernández-Breis, JT., Buels, R., Campbell, MP., Chiba, H., Cock, PJA., Cohen, KB., Dumontier, M., Fujisawa, T., Fujiwara, T., Garcia, L., Gaudet, P., Hattori, E., Hoehndorf, R., Itaya, K., Ito, M., Jamieson, D., Jupp, S., Juty, N., Kalderimis, A., Kato, F., Kawaji, H., Kawashima, T., Kinjo, AR., Komiyama, Y., Kotera, M., Kushida, T., Malone, J., Matsubara, M., Mizuno, S., Mizutani, S., Mori, H., Moriya, Y., Murakami, K., Nakazato, T., Nishide, H., Nishimura, Y., Ogishima, S., Ohta, T., Okuda, S., Ono, H., Perez-Riverol, Y., Shinmachi, D., Splendiani, A., Strozzi, F., Suzuki, S., Takehara, J., Thompson, M., Tokimatsu, T., Uchiyama, I., Verspoor, K., Wilkinson, MD., Wimalaratne, S., Yamada, I., Yamamoto, N., Yarimizu, M., Kawamoto, S. and Takagi, T., 2019. BioHackathon series in 2013 and 2014: Improvements of semantic interoperability in life science data and services F1000Research, v. 8
Doi: http://doi.org/10.12688/f1000research.18238.1
2018
Komkova, D., Lyne, R., Sullivan, J., Yehudi, Y. and Micklem, G., 2018. The InterMine Android app: Cross-organism genomic data in your pocket. F1000Research, v. 7
Doi: http://doi.org/10.12688/f1000research.17005.2
Ammari, M., Aryamontri, AC., Attrill, H., Bairoch, A., Berardini, T., Blake, J., Chen, Q., Collado, J., Dauga, D., Dudley, JT., Engel, S., Erill, I., Fey, P., Gibson, R., Hermjakob, H., Holliday, G., Howe, D., Hunter, C., Landsman, D., Lovering, R., Manthravadi, D., Marchler-Bauer, A., Matthews, B., McDonagh, EM., Meldal, B., Micklem, G., Mietchen, D., Mungall, CJ., Pruitt, K., Rajamanickam, VS., Reecy, JM., Rey, A., Shameer, K., Shipitsyna, A., Toribio, AL., Tuli, MA., Uetz, P., Wittig, U., Wood, V. and Biocuration, IS., 2018. Biocuration: Distilling data into knowledge PLOS BIOLOGY, v. 16
Doi: http://doi.org/10.1371/journal.pbio.2002846
Nowell, RW., Almeida, P., Wilson, CG., Smith, TP., Fontaneto, D., Crisp, A., Micklem, G., Tunnacliffe, A., Boschetti, C. and Barraclough, TG., 2018. Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species. PLoS Biol, v. 16
Doi: http://doi.org/10.1371/journal.pbio.2004830
Sivade Dumousseau, M., Alonso-López, D., Ammari, M., Bradley, G., Campbell, NH., Ceol, A., Cesareni, G., Combe, C., De Las Rivas, J., Del-Toro, N., Heimbach, J., Hermjakob, H., Jurisica, I., Koch, M., Licata, L., Lovering, RC., Lynn, DJ., Meldal, BHM., Micklem, G., Panni, S., Porras, P., Ricard-Blum, S., Roechert, B., Salwinski, L., Shrivastava, A., Sullivan, J., Thierry-Mieg, N., Yehudi, Y., Van Roey, K. and Orchard, S., 2018. Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. BMC Bioinformatics, v. 19
Doi: http://doi.org/10.1186/s12859-018-2118-1
2017
Krishnakumar, V., Contrino, S., Cheng, C-Y., Belyaeva, I., Ferlanti, ES., Miller, JR., Vaughn, MW., Micklem, G., Town, CD. and Chan, AP., 2017. ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery. Plant and Cell Physiology, v. 58
Doi: http://doi.org/10.1093/pcp/pcw200
Gracia, T., Wang, X., Su, Y., Norgett, EE., Williams, TL., Moreno, P., Micklem, G. and Frankl, FEK., 2017. Urinary Exosomes Contain MicroRNAs Capable of Paracrine Modulation of Tubular Transporters in Kidney Scientific Reports, v. 7
Doi: 10.1038/srep40601
Modrell, MS., Lyne, M., Carr, AR., Zakon, HH., Buckley, D., Campbell, AS., Davis, MC., Micklem, G. and Baker, CV., 2017. Insights into electrosensory organ development, physiology and evolution from a lateral line-enriched transcriptome eLife, v. 6
Doi: http://doi.org/10.7554/eLife.24197
Pacini, C., Ajioka, JW. and Micklem, G., 2017. Empirical Bayes method for reducing false discovery rates of correlation matrices with block diagonal structure BMC Bioinformatics, v. 18
Doi: http://doi.org/10.1186/s12859-017-1623-y
Guo, J., Garrett, M., Micklem, G. and Brogna, S., 2017. Correction for Guo et al., "Poly(A) Signals Located near the 5' End of Genes Are Silenced by a General Mechanism That Prevents Premature 3'-End Processing". Mol Cell Biol, v. 37
Doi: http://doi.org/10.1128/MCB.00189-17
Combe, CW., Sivade, MD., Hermjakob, H., Heimbach, J., Meldal, BHM., Micklem, G., Orchard, S. and Rappsilber, J., 2017. ComplexViewer: visualization of curated macromolecular complexes. Bioinformatics, v. 33
Doi: 10.1093/bioinformatics/btx497
2016
Aranda, M., Li, Y., Liew, YJ., Baumgarten, S., Simakov, O., Wilson, MC., Piel, J., Ashoor, H., Bougouffa, S., Bajic, VB., Ryu, T., Ravasi, T., Bayer, T., Micklem, G., Kim, H., Bhak, J., LaJeunesse, TC. and Voolstra, CR., 2016. Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle. Sci Rep, v. 6
Doi: http://doi.org/10.1038/srep39734
2015
Krishnakumar, V., Hanlon, MR., Contrino, S., Ferlanti, ES., Karamycheva, S., Kim, M., Rosen, BD., Cheng, C-Y., Moreira, W., Mock, SA., Stubbs, J., Sullivan, JM., Krampis, K., Miller, JR., Micklem, G., Vaughn, M. and Town, CD., 2015. Araport: the Arabidopsis information portal. Nucleic Acids Res, v. 43
Doi: 10.1093/nar/gku1200
Crisp, A., Boschetti, C., Perry, M., Tunnacliffe, A. and Micklem, G., 2015. Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes. Genome Biol, v. 16
Doi: http://doi.org/10.1186/s13059-015-0607-3
Lyne, R., Sullivan, J., Butano, D., Contrino, S., Heimbach, J., Hu, F., Kalderimis, A., Lyne, M., Smith, RN., Štěpán, R., Balakrishnan, R., Binkley, G., Harris, T., Karra, K., Moxon, SAT., Motenko, H., Neuhauser, S., Ruzicka, L., Cherry, M., Richardson, J., Stein, L., Westerfield, M., Worthey, E. and Micklem, G., 2015. Cross-organism analysis using InterMine. Genesis, v. 53
Doi: http://doi.org/10.1002/dvg.22869
Rhee, DB., Croken, MM., Shieh, KR., Sullivan, J., Micklem, G., Kim, K. and Golden, A., 2015. toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research. Database (Oxford), v. 2015
Doi: http://doi.org/10.1093/database/bav066
2014
Kalderimis, A., Stepan, R., Sullivan, J., Lyne, R., Lyne, M. and Micklem, G., 2014. BioJS InterMine List Analysis: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints
Doi: 10.12688/f1000research.3-45.v1
Kalderimis, A., Stepan, R., Sullivan, J., Lyne, R., Lyne, M. and Micklem, G., 2014. BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints
Doi: 10.12688/f1000research.3-46.v1
Kalderimis, A., Stepan, R., Sullivan, J., Lyne, R., Lyne, M. and Micklem, G., 2014. BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs. F1000Res, v. 3
Doi: http://doi.org/10.12688/f1000research.3-51.v1
Liew, YJ., Aranda, M., Carr, A., Baumgarten, S., Zoccola, D., Tambutté, S., Allemand, D., Micklem, G. and Voolstra, CR., 2014. Identification of microRNAs in the coral Stylophora pistillata. PLoS One, v. 9
Doi: 10.1371/journal.pone.0091101
Kalderimis, A., Lyne, R., Butano, D., Contrino, S., Lyne, M., Heimbach, J., Hu, F., Smith, R., Stěpán, R., Sullivan, J. and Micklem, G., 2014. InterMine: extensive web services for modern biology. Nucleic Acids Res, v. 42
Doi: 10.1093/nar/gku301
Diffner, E., Beck, D., Gudgin, E., Thoms, JAI., Knezevic, K., Pridans, C., Foster, S., Goode, D., Khong Lim, W., Boelen, L., Metzeler, KH., Micklem, G., Bohlander, SK., Buske, C., Burnett, A., Ottersbach, K., Vassiliou, GS., Olivier, J., Wong, JWH., Gottgens, B., Huntly, BJ. and Pimanda, JE., 2014. Erratum: Activity of a heptad of transcription factors is associated with stem cell programs and clinical outcome in acute myeloid leukemia (Blood (2013) 121:12 (2289-2300)) Blood, v. 123
Doi: http://doi.org/10.1182/blood-2014-03-564831
Diffner, E., Beck, D., Gudgin, E., Thoms, JAI., Knezevic, K., Pridans, C., Foster, S., Goode, D., Lim, WK., Boelen, L., Metzeler, KH., Micklem, G., Bohlander, SK., Buske, C., Burnett, A., Ottersbach, K., Vassiliou, GS., Olivier, J., Wong, JWH., Goettgens, B., Huntly, BJ. and Pimanda, JE., 2014. Activity of a heptad of transcription factors is associated with stem cell programs and clinical outcome in acute myeloid leukemia (vol 121, pg 2289, 2013) BLOOD, v. 123
Doi: 10.1182/blood-2014-03-564831
Bean, DM., Heimbach, J., Ficorella, L., Micklem, G., Oliver, SG. and Favrin, G., 2014. esyN: network building, sharing and publishing. PLoS One, v. 9
Doi: 10.1371/journal.pone.0106035
2013
Diffner, E., Beck, D., Gudgin, E., Thoms, JAI., Knezevic, K., Pridans, C., Foster, S., Goode, D., Lim, WK., Boelen, L., Metzeler, KH., Micklem, G., Bohlander, SK., Buske, C., Burnett, A., Ottersbach, K., Vassiliou, GS., Olivier, J., Wong, JWH., Göttgens, B., Huntly, BJ. and Pimanda, JE., 2013. Activity of a heptad of transcription factors is associated with stem cell programs and clinical outcome in acute myeloid leukemia. Blood, v. 121
Doi: http://doi.org/10.1182/blood-2012-07-446120
Katayama, T., Wilkinson, MD., Micklem, G., Kawashima, S., Yamaguchi, A., Nakao, M., Yamamoto, Y., Okamoto, S., Oouchida, K., Chun, H-W., Aerts, J., Afzal, H., Antezana, E., Arakawa, K., Aranda, B., Belleau, F., Bolleman, J., Bonnal, RJ., Chapman, B., Cock, PJ., Eriksson, T., Gordon, PM., Goto, N., Hayashi, K., Horn, H., Ishiwata, R., Kaminuma, E., Kasprzyk, A., Kawaji, H., Kido, N., Kim, YJ., Kinjo, AR., Konishi, F., Kwon, K-H., Labarga, A., Lamprecht, A-L., Lin, Y., Lindenbaum, P., McCarthy, L., Morita, H., Murakami, K., Nagao, K., Nishida, K., Nishimura, K., Nishizawa, T., Ogishima, S., Ono, K., Oshita, K., Park, K-J., Prins, P., Saito, TL., Samwald, M., Satagopam, VP., Shigemoto, Y., Smith, R., Splendiani, A., Sugawara, H., Taylor, J., Vos, RA., Withers, D., Yamasaki, C., Zmasek, CM., Kawamoto, S., Okubo, K., Asai, K. and Takagi, T., 2013. The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. J Biomed Semantics, v. 4
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Sullivan, J., Karra, K., Moxon, SAT., Vallejos, A., Motenko, H., Wong, JD., Aleksic, J., Balakrishnan, R., Binkley, G., Harris, T., Hitz, B., Jayaraman, P., Lyne, R., Neuhauser, S., Pich, C., Smith, RN., Trinh, Q., Cherry, JM., Richardson, J., Stein, L., Twigger, S., Westerfield, M., Worthey, E. and Micklem, G., 2013. InterMOD: integrated data and tools for the unification of model organism research. Sci Rep, v. 3
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Lyne, M., Smith, RN., Lyne, R., Aleksic, J., Hu, F., Kalderimis, A., Stepan, R. and Micklem, G., 2013. metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research. Database (Oxford), v. 2013
Doi: 10.1093/database/bat060
Diffner, E., Beck, D., Gudgin, E., Thoms, JAI., Knezevic, K., Pridans, C., Foster, S., Goode, D., Weng, KL., Boelen, L., Metzeler, KH., Micklem, G., Bohlander, SK., Buske, C., Burnett, A., Ottersbach, K., Vassiliou, GS., Olivier, J., Wong, JWH., Goettgens, B., Huntly, BJ. and Pimanda, JE., 2013. Activity of a heptad of transcription factors is associated with stem cell programs and clinical outcome in acute myeloid leukemia BLOOD, v. 121
Doi: 10.1182/blood-2012-07-446120
Baumgarten, S., Bayer, T., Aranda, M., Liew, YJ., Carr, A., Micklem, G. and Voolstra, CR., 2013. Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals. BMC Genomics, v. 14
Doi: http://doi.org/10.1186/1471-2164-14-704
Sullivan, J., Karra, K., Moxon, SA., Vallejos, A., Motenko, H., Wong, JD., Aleksic, J., Balakrishnan, R., Binkley, G., Harris, T., Hitz, B., Jayaraman, P., Lyne, R., Neuhauser, S., Pich, C., Smith, RN., Trinh, Q., Cherry, JM., Richardson, J., Stein, L., Twigger, S., Westerfield, M., Worthey, E. and Micklem, G., 2013. CORRIGENDUM: InterMOD: integrated data and tools for the unification of model organism research. Sci Rep, v. 3
Doi: http://doi.org/10.1038/srep03303
2013. CORRIGENDUM: InterMOD: integrated data and tools for the unification of model organism research Scientific reports, v. 3
2012
Eyres, I., Frangedakis, E., Fontaneto, D., Herniou, EA., Boschetti, C., Carr, A., Micklem, G., Tunnacliffe, A. and Barraclough, TG., 2012. Multiple functionally divergent and conserved copies of alpha tubulin in bdelloid rotifers. BMC Evol Biol, v. 12
Doi: http://doi.org/10.1186/1471-2148-12-148
Smith, RN., Aleksic, J., Butano, D., Carr, A., Contrino, S., Hu, F., Lyne, M., Lyne, R., Kalderimis, A., Rutherford, K., Stepan, R., Sullivan, J., Wakeling, M., Watkins, X. and Micklem, G., 2012. InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. Bioinformatics, v. 28
Doi: http://doi.org/10.1093/bioinformatics/bts577
Boschetti, C., Carr, A., Crisp, A., Eyres, I., Wang-Koh, Y., Lubzens, E., Barraclough, TG., Micklem, G. and Tunnacliffe, A., 2012. Biochemical diversification through foreign gene expression in bdelloid rotifers. PLoS Genet, v. 8
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Contrino, S., Smith, RN., Butano, D., Carr, A., Hu, F., Lyne, R., Rutherford, K., Kalderimis, A., Sullivan, J., Carbon, S., Kephart, ET., Lloyd, P., Stinson, EO., Washington, NL., Perry, MD., Ruzanov, P., Zha, Z., Lewis, SE., Stein, LD. and Micklem, G., 2012. modMine: flexible access to modENCODE data. Nucleic Acids Res, v. 40
Doi: http://doi.org/10.1093/nar/gkr921
Balakrishnan, R., Park, J., Karra, K., Hitz, BC., Binkley, G., Hong, EL., Sullivan, J., Micklem, G. and Cherry, JM., 2012. YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit. Database (Oxford), v. 2012
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2011
Guo, J., Garrett, M., Micklem, G. and Brogna, S., 2011. Poly(A) signals located near the 5' end of genes are silenced by a general mechanism that prevents premature 3'-end processing. Mol Cell Biol, v. 31
Doi: http://doi.org/10.1128/MCB.00919-10
Sykacek, P., Kreil, DP., Meadows, LA., Auburn, RP., Fischer, B., Russell, S. and Micklem, G., 2011. The impact of quantitative optimization of hybridization conditions on gene expression analysis. BMC Bioinformatics, v. 12
Doi: 10.1186/1471-2105-12-73
Lim, WK. and Micklem, G., 2011. MicroRNAs dysregulated in breast cancer preferentially target key oncogenic pathways. Mol Biosyst, v. 7
Doi: http://doi.org/10.1039/c1mb05181d
Washington, NL., Stinson, EO., Perry, MD., Ruzanov, P., Contrino, S., Smith, R., Zha, Z., Lyne, R., Carr, A., Lloyd, P., Kephart, E., McKay, SJ., Micklem, G., Stein, LD. and Lewis, SE., 2011. The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details. Database (Oxford), v. 2011
Doi: http://doi.org/10.1093/database/bar023
Washington, NL., Stinson, EO., Perry, MD., Ruzanov, P., Contrino, S., Smith, R., Zha, Z., Lyne, R., Carr, A., Lloyd, P., Kephart, E., McKay, SJ., Micklem, G., Stein, LD. and Lewis, SE., 2011. The modENCODE data coordination center: Lessons in harvesting comprehensive experimental details Database, v. 2011
Doi: http://doi.org/10.1093/database/bar023
2010
modENCODE Consortium, , Roy, S., Ernst, J., Kharchenko, PV., Kheradpour, P., Negre, N., Eaton, ML., Landolin, JM., Bristow, CA., Ma, L., Lin, MF., Washietl, S., Arshinoff, BI., Ay, F., Meyer, PE., Robine, N., Washington, NL., Di Stefano, L., Berezikov, E., Brown, CD., Candeias, R., Carlson, JW., Carr, A., Jungreis, I., Marbach, D., Sealfon, R., Tolstorukov, MY., Will, S., Alekseyenko, AA., Artieri, C., Booth, BW., Brooks, AN., Dai, Q., Davis, CA., Duff, MO., Feng, X., Gorchakov, AA., Gu, T., Henikoff, JG., Kapranov, P., Li, R., MacAlpine, HK., Malone, J., Minoda, A., Nordman, J., Okamura, K., Perry, M., Powell, SK., Riddle, NC., Sakai, A., Samsonova, A., Sandler, JE., Schwartz, YB., Sher, N., Spokony, R., Sturgill, D., van Baren, M., Wan, KH., Yang, L., Yu, C., Feingold, E., Good, P., Guyer, M., Lowdon, R., Ahmad, K., Andrews, J., Berger, B., Brenner, SE., Brent, MR., Cherbas, L., Elgin, SCR., Gingeras, TR., Grossman, R., Hoskins, RA., Kaufman, TC., Kent, W., Kuroda, MI., Orr-Weaver, T., Perrimon, N., Pirrotta, V., Posakony, JW., Ren, B., Russell, S., Cherbas, P., Graveley, BR., Lewis, S., Micklem, G., Oliver, B., Park, PJ., Celniker, SE., Henikoff, S., Karpen, GH., Lai, EC., MacAlpine, DM., Stein, LD., White, KP. and Kellis, M., 2010. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science, v. 330
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Gerstein, MB., Lu, ZJ., Van Nostrand, EL., Cheng, C., Arshinoff, BI., Liu, T., Yip, KY., Robilotto, R., Rechtsteiner, A., Ikegami, K., Alves, P., Chateigner, A., Perry, M., Morris, M., Auerbach, RK., Feng, X., Leng, J., Vielle, A., Niu, W., Rhrissorrakrai, K., Agarwal, A., Alexander, RP., Barber, G., Brdlik, CM., Brennan, J., Brouillet, JJ., Carr, A., Cheung, M-S., Clawson, H., Contrino, S., Dannenberg, LO., Dernburg, AF., Desai, A., Dick, L., Dosé, AC., Du, J., Egelhofer, T., Ercan, S., Euskirchen, G., Ewing, B., Feingold, EA., Gassmann, R., Good, PJ., Green, P., Gullier, F., Gutwein, M., Guyer, MS., Habegger, L., Han, T., Henikoff, JG., Henz, SR., Hinrichs, A., Holster, H., Hyman, T., Iniguez, AL., Janette, J., Jensen, M., Kato, M., Kent, WJ., Kephart, E., Khivansara, V., Khurana, E., Kim, JK., Kolasinska-Zwierz, P., Lai, EC., Latorre, I., Leahey, A., Lewis, S., Lloyd, P., Lochovsky, L., Lowdon, RF., Lubling, Y., Lyne, R., MacCoss, M., Mackowiak, SD., Mangone, M., McKay, S., Mecenas, D., Merrihew, G., Miller, DM., Muroyama, A., Murray, JI., Ooi, S-L., Pham, H., Phippen, T., Preston, EA., Rajewsky, N., Rätsch, G., Rosenbaum, H., Rozowsky, J., Rutherford, K., Ruzanov, P., Sarov, M., Sasidharan, R., Sboner, A., Scheid, P., Segal, E., Shin, H., Shou, C., Slack, FJ., Slightam, C., Smith, R., Spencer, WC., Stinson, EO., Taing, S., Takasaki, T., Vafeados, D., Voronina, K., Wang, G., Washington, NL., Whittle, CM., Wu, B., Yan, K-K., Zeller, G., Zha, Z., Zhong, M., Zhou, X., modENCODE Consortium, , Ahringer, J., Strome, S., Gunsalus, KC., Micklem, G., Liu, XS., Reinke, V., Kim, SK., Hillier, LW., Henikoff, S., Piano, F., Snyder, M., Stein, L., Lieb, JD. and Waterston, RH., 2010. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science, v. 330
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2009
Garrett, M., Fullaondo, A., Troxler, L., Micklem, G. and Gubb, D., 2009. Identification and analysis of serpin-family genes by homology and synteny across the 12 sequenced Drosophilid genomes. BMC Genomics, v. 10
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Celniker, SE., Dillon, LAL., Gerstein, MB., Gunsalus, KC., Henikoff, S., Karpen, GH., Kellis, M., Lai, EC., Lieb, JD., MacAlpine, DM., Micklem, G., Piano, F., Snyder, M., Stein, L., White, KP., Waterston, RH. and modENCODE Consortium, , 2009. Unlocking the secrets of the genome. Nature, v. 459
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2007
Lyne, R., Smith, R., Rutherford, K., Wakeling, M., Varley, A., Guillier, F., Janssens, H., Ji, W., Mclaren, P., North, P., Rana, D., Riley, T., Sullivan, J., Watkins, X., Woodbridge, M., Lilley, K., Russell, S., Ashburner, M., Mizuguchi, K. and Micklem, G., 2007. FlyMine: an integrated database for Drosophila and Anopheles genomics. Genome Biol, v. 8
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Bernhardt, K., Chand, NS., Carter, E., Lee, J., Xu, Y., Zhu, X., Rowe, D., Ajioka, JW., Goncalves, JM., Haseloff, J. and Micklem, G., 2007. New tools for self-organized pattern formation BMC Systems Biology, v. 1
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Hudson, SG., Garrett, MJ., Carlson, JW., Micklem, G., Celniker, SE., Goldstein, ES. and Newfeld, SJ., 2007. Phylogenetic and genomewide analyses suggest a functional relationship between kayak, the Drosophila fos homolog, and fig, a predicted protein phosphatase 2c nested within a kayak intron. Genetics, v. 177
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Bernhardt, K., Carter, EJ., Chand, NS., Lee, J., Xu, Y., Zhu, X., Ajioka, JW., Goncalves, JM., Haseloff, J., Micklem, G. and Rowe, D., 2007. New tools for self-organised pattern formation IET Synthetic Biology, v. 1
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Sykacek, P., Clarkson, R., Print, C., Furlong, R. and Micklem, G., 2007. Bayesian modelling of shared gene function. Bioinformatics, v. 23
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2006
Choksi, SP., Southall, TD., Bossing, T., Edoff, K., de Wit, E., Fischer, BE., van Steensel, B., Micklem, G. and Brand, AH., 2006. Prospero acts as a binary switch between self-renewal and differentiation in Drosophila neural stem cells. Dev Cell, v. 11
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International Human Genome Sequencing Consortium., and Woodfine, K., 2004. Finishing the euchromatic sequence of the human genome Nature, v. 431
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Micklem, G. and The Genome Sequencing Consortium, , 2001. Initial sequencing and analysis of the human genome Nature, v. 409
1997
Bignell, G., Micklem, G., Stratton, MR., Ashworth, A. and Wooster, R., 1997. The BRC repeats are conserved in mammalian BRCA2 proteins. Hum Mol Genet, v. 6
Doi: http://doi.org/10.1093/hmg/6.1.53
Flint, J., Thomas, K., Micklem, G., Raynham, H., Clark, K., Doggett, NA., King, A. and Higgs, DR., 1997. The relationship between chromosome structure and function at a human telomeric region. Nat Genet, v. 15
Doi: http://doi.org/10.1038/ng0397-252
Flint, J., Bates, GP., Clark, K., Dorman, A., Willingham, D., Roe, BA., Micklem, G., Higgs, DR. and Louis, EJ., 1997. Sequence comparison of human and yeast telomeres identifies structurally distinct subtelomeric domains. Hum Mol Genet, v. 6
Doi: http://doi.org/10.1093/hmg/6.8.1305
Schofield, JP., Elgar, G., Greystrong, J., Lye, G., Deadman, R., Micklem, G., King, A., Brenner, S. and Vaudin, M., 1997. Regions of human chromosome 2 (2q32-q35) and mouse chromosome 1 show synteny with the pufferfish genome (Fugu rubripes). Genomics, v. 45
Doi: http://doi.org/10.1006/geno.1997.4913
1996
Coy, JF., Dübel, S., Kioschis, P., Thomas, K., Micklem, G., Delius, H. and Poustka, A., 1996. Molecular cloning of tissue-specific transcripts of a transketolase-related gene: implications for the evolution of new vertebrate genes. Genomics, v. 32
Doi: http://doi.org/10.1006/geno.1996.0124
1995
Baxendale, S., Abdulla, S., Elgar, G., Buck, D., Berks, M., Micklem, G., Durbin, R., Bates, G., Brenner, S. and Beck, S., 1995. Comparative sequence analysis of the human and pufferfish Huntington's disease genes. Nat Genet, v. 10
Doi: 10.1038/ng0595-67
WOOSTER, R., BIGNELL, G., LANCASTER, J., SWIFT, S., SEAL, S., MANGION, J., COLLINS, N., GREGORY, S., GUMBS, C., MICKLEM, G., BARFOOT, R., HAMOUDI, R., PATEL, S., RICE, C., BIGGS, P., HASHIM, Y., SMITH, A., CONNOR, F., ARASON, A., GUDMUNDSSON, J., FICENEC, D., KELSELL, D., FORD, D., TONIN, P., BISHOP, DT., SPURR, NK., PONDER, BAJ., EELES, R., PETO, J., DEVILEE, P., CORNELISSE, C., LYNCH, H., NAROD, S., LENOIR, G., EGILSSON, V., BARKADOTTIR, RB., EASTON, DF., BENTLEY, DR., FUTREAL, PA., ASHWORTH, A. and STRATTON, MR., 1995. IDENTIFICATION OF THE BREAST-CANCER SUSCEPTIBILITY GENE BRCA2 NATURE, v. 378
Wooster, R., Bignell, G., Lancaster, J., Swift, S., Seal, S., Mangion, J., Collins, N., Gregory, S., Gumbs, C., Micklem, G., Barfoot, R., Hamoudi, R., Patel, S., Rices, C., Biggs, P., Hashim, Y., Smith, A., Connor, F., Arason, A., Gudmundsson, J., Flcenec, D., Kelsell, D., Ford, D., Tonin, P., Timothy Bishop, D., Spurr, NK., Ponder, BAJ., Eeles, R., Peto, J., Devilee, P., Cornelisse, C., Lynch, H., Narod, S., Lenoir, G., Egilsson, V., Bjork Barkadottir, R., Easton, DF., Bentley, DR., Futreal, PA., Ashworth, A. and Stratton, MR., 1995. Identification of the breast cancer susceptibility gene BRCA2 Nature, v. 378
Doi: http://doi.org/10.1038/378789a0
1994
Ambrose, CM., Duyao, MP., Barnes, G., Bates, GP., Lin, CS., Srinidhi, J., Baxendale, S., Hummerich, H., Lehrach, H., Altherr, M., Wasmuth, J., Buckler, A., Church, D., Housman, D., Berks, M., Micklem, G., Durbin, R., Dodge, A., Read, A., Gusella, J. and MacDonald, ME., 1994. Structure and expression of the Huntington's disease gene: evidence against simple inactivation due to an expanded CAG repeat. Somat Cell Mol Genet, v. 20
Doi: 10.1007/BF02257483
Castelli-Gair, J., Greig, S., Micklem, G. and Akam, M., 1994. Dissecting the temporal requirements for homeotic gene function. Development, v. 120
Doi: 10.1242/dev.120.7.1983
Nehls, M., Pfeifer, D., Micklem, G., Schmoor, C. and Boehm, T., 1994. The sequence complexity of exons trapped from the mouse genome. Curr Biol, v. 4
Doi: http://doi.org/10.1016/s0960-9822(00)00222-0
BUCK, D., THOMAS, K., HEATHCOTT, R., MUNGALL, A., MCMURRAY, A., BARON, L., HODGSON, D., ZHAO, S., BENTLEY, D., KIOSCHIS, P., COY, JF., KONECKI, DS., MICKLEM, G. and POUSTKA, AM., 1994. SEQUENCING AND ANALYSIS OF HUMAN XQ28 GENOMIC DNA IN THE REGION OF THE RCP/GCP LOCUS CYTOGENET CELL GENET, v. 67
1993
Micklem, G., Rowley, A., Harwood, J., Nasmyth, K. and Diffley, JF., 1993. Yeast origin recognition complex is involved in DNA replication and transcriptional silencing. Nature, v. 366
Doi: http://doi.org/10.1038/366087a0
1987
Brand, AH., Micklem, G. and Nasmyth, K., 1987. A yeast silencer contains sequences that can promote autonomous plasmid replication and transcriptional activation. Cell, v. 51
Doi: 10.1016/0092-8674(87)90094-8
Komkova, D., Lyne, R., Sullivan, J., Yehudi, Y. and Micklem, G., The InterMine Android app: Cross-organism genomic data in your pocket F1000Research, v. 7
Doi: http://doi.org/10.12688/f1000research.17005.2
Baker, C., Perera, S., Micklem, G., Lyne, R., Williams, R., Stubbs, O., Buehler, D., Sauka-Spengler, T., Noda, M. and Southard-Smith, M., Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach Glia,
Bazaga, A., Gunwant, N. and Micklem, G., Translating synthetic natural language to database queries with a polyglot deep learning framework Scientific Reports,
Micklem, G., HumanMine: advanced data searching, analysis and cross-species comparison. Database: the journal of biological databases and curation,
Doi: 10.1093/database/baac054
Micklem, G., HumanMine: advanced data searching, analysis and cross-species comparison. Database: the journal of biological databases and curation,
