2022
Efstathiou, S., Ottens, F., Schütter, L-S., Ravanelli, S., Charmpilas, N., Gutschmidt, A., Le Pen, J., Gehring, NH., Miska, EA., Bouças, J. and Hoppe, T., 2022. ER-associated RNA silencing promotes ER quality control. Nat Cell Biol, v. 24
Doi: 10.1038/s41556-022-01025-4
Carruthers, M., Edgley, D., Saxon, A., Gabagambi, N., Shechonge, A., Miska, E., Durbin, R., Bridle, J., Turner, G. and Genner, M., 2022. Ecological speciation promoted by divergent regulation of functional genes within African cichlid fishes
Doi: 10.1101/2022.01.07.475335
Navarro, IC., Suen, KM., Bensaddek, D., Tanpure, A., Lamond, A., Balasubramanian, S. and Miska, E., 2022. Identification of putative reader proteins of 5-methylcytosine and its derivatives in <i>Caenorhabditis elegans</i> RNA
Doi: 10.1101/2022.01.24.477592
Vernaz, G., Hudson, AG., Santos, ME., Fischer, B., Carruthers, M., Shechonge, AH., Gabagambi, NP., Tyers, AM., Ngatunga, BP., Malinsky, M., Durbin, R., Turner, GF., Genner, MJ. and Miska, E., 2022. Epigenetic Divergence during Early Stages of Speciation in an African Crater Lake Cichlid Fish Nature Ecology and Evolution,
Doi: 10.1038/s41559-022-01894-w
Erhard, F., Saliba, AE., Lusser, A., Toussaint, C., Hennig, T., Prusty, BK., Kirschenbaum, D., Abadie, K., Miska, EA., Friedel, CC., Amit, I., Micura, R. and Dölken, L., 2022. Time-resolved single-cell RNA-seq using metabolic RNA labelling Nature Reviews Methods Primers, v. 2
Doi: 10.1038/s43586-022-00157-z
2021
Parada, GE., Munita, R., Georgakopoulos-Soares, I., Fernandes, HJR., Kedlian, VR., Metzakopian, E., Andres, ME., Miska, EA. and Hemberg, M., 2021. MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development. Genome Biol, v. 22
Doi: http://doi.org/10.1186/s13059-020-02246-2
Berkyurek, AC., Furlan, G., Lampersberger, L., Beltran, T., Weick, E-M., Nischwitz, E., Cunha Navarro, I., Braukmann, F., Akay, A., Price, J., Butter, F., Sarkies, P. and Miska, EA., 2021. The RNA polymerase II subunit RPB-9 recruits the integrator complex to terminate Caenorhabditis elegans piRNA transcription. EMBO J, v. 40
Doi: http://doi.org/10.15252/embj.2020105565
Sun, L., Li, P., Ju, X., Rao, J., Huang, W., Ren, L., Zhang, S., Xiong, T., Xu, K., Zhou, X., Gong, M., Miska, E., Ding, Q., Wang, J. and Zhang, QC., 2021. In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs. Cell, v. 184
Doi: http://doi.org/10.1016/j.cell.2021.02.008
Puntambekar, S., Newhouse, R., San-Miguel, J., Chauhan, R., Vernaz, G., Willis, T., Wayland, MT., Umrania, Y., Miska, EA. and Prabakaran, S., 2021. Author Correction: Evolutionary divergence of novel open reading frames in cichlids speciation. Sci Rep, v. 11
Doi: http://doi.org/10.1038/s41598-021-88187-7
Medhi, R., Price, J., Furlan, G., Gorges, B., Sapetschnig, A. and Miska, E., 2021. RNA uridyl transferases TUT4/7 differentially regulate miRNA variants depending on the cancer cell-type
Doi: 10.1101/2021.07.12.451846
Riehl, K., Riccio, C., Miska, E. and Hemberg, M., 2021. TransposonUltimate: software for transposon classification, annotation and detection
Doi: 10.1101/2021.04.30.442214
Vernaz, G., Hudson, A., Emília Santos, M., Fischer, B., Carruthers, M., Shechonge, A., Gabagambi, N., Tyers, A., Ngatunga, B., Malinsky, M., Durbin, R., Turner, G., Genner, M. and Miska, E., 2021. Epigenetic Divergence during Early Stages of Speciation in an African Crater Lake Cichlid Fish
Doi: 10.1101/2021.07.30.435319
Ramakrishna, NB., Murison, K., Miska, EA. and Leitch, HG., 2021. Epigenetic Regulation during Primordial Germ Cell Development and Differentiation. Sex Dev, v. 15
Doi: http://doi.org/10.1159/000520412
Ziv, O., Farberov, S., Lau, JY., Miska, E., Kudla, G. and Ulitsky, I., 2021. Structural features within the NORAD long noncoding RNA underlie efficient repression of Pumilio activity
Doi: 10.1101/2021.11.19.469243
Medhi, R., Price, J., Furlan, G., Gorges, B., Sapetschnig, A. and Miska, EA., 2021. RNA uridyl transferases TUT4/7 differentially regulate miRNA variants depending on the cancer cell-type. RNA,
Doi: 10.1261/rna.078976.121
2020
Svardal, H., Quah, FX., Malinsky, M., Ngatunga, BP., Miska, EA., Salzburger, W., Genner, MJ., Turner, GF. and Durbin, R., 2020. Ancestral Hybridization Facilitated Species Diversification in the Lake Malawi Cichlid Fish Adaptive Radiation. Molecular biology and evolution, v. 37
Doi: 10.1093/molbev/msz294
Lewis, S., Ross, L., Bain, SA., Pahita, E., Smith, SA., Cordaux, R., Miska, EM., Lenhard, B., Jiggins, FM. and Sarkies, P., 2020. Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods
Doi: 10.1101/2020.01.27.920108
Lewis, A., Berkyurek, AC., Greiner, A., Sawh, AN., Vashisht, A., Merrett, S., Flamand, MN., Wohlschlegel, J., Sarov, M., Miska, EA. and Duchaine, TF., 2020. A Family of Argonaute-Interacting Proteins Gates Nuclear RNAi. Mol Cell, v. 78
Doi: http://doi.org/10.1016/j.molcel.2020.04.007
Bista, I., McCarthy, SA., Wood, J., Ning, Z., Detrich Iii, HW., Desvignes, T., Postlethwait, J., Chow, W., Howe, K., Torrance, J., Smith, M., Oliver, K., Vertebrate Genomes Project Consortium, , Miska, EA. and Durbin, R., 2020. The genome sequence of the channel bull blenny, Cottoperca gobio (Günther, 1861). Wellcome Open Res, v. 5
Doi: 10.12688/wellcomeopenres.16012.1
Suen, KM., Braukmann, F., Butler, R., Bensaddek, D., Akay, A., Lin, C-C., Milonaitytė, D., Doshi, N., Sapetschnig, A., Lamond, A., Ladbury, JE. and Miska, E., 2020. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans Nature Communications,
Parada, G., Munita, R., Georgakopoulos-Soares, I., Fernandez, H., Metzakopian, E., Andres, ME., Miska, E. and Hemberg, M., 2020. MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development
Doi: 10.1101/2020.02.12.945683
Chauve, L., Le Pen, J., Hodge, F., Todtenhaupt, P., Biggins, L., Miska, EA., Andrews, S. and Casanueva, O., 2020. High-Throughput Quantitative RT-PCR in Single and Bulk C. elegans Samples Using Nanofluidic Technology. J Vis Exp,
Doi: http://doi.org/10.3791/61132
Berkyurek, A., Furlan, G., Lampersberger, L., Beltran, T., Weick, E-M., Nischwitz, E., Navarro, IC., Braukmann, F., Akay, A., Price, J., Butter, F., Sarkies, P. and Miska, E., 2020. The RNA Polymerase II core subunit RPB-9 directs transcriptional elongation at piRNA loci in<i>Caenorhabditis elegans</i>
Doi: 10.1101/2020.05.01.070433
van Steenwyk, G., Gapp, K., Jawaid, A., Germain, P-L., Manuella, F., Tanwar, DK., Zamboni, N., Gaur, N., Efimova, A., Thumfart, KM., Miska, EA. and Mansuy, IM., 2020. Involvement of circulating factors in the transmission of paternal experiences through the germline. EMBO J, v. 39
Doi: http://doi.org/10.15252/embj.2020104579
Puntambekar, S., Newhouse, R., San-Miguel, J., Chauhan, R., Vernaz, G., Willis, T., Wayland, MT., Umrania, Y., Miska, EA. and Prabakaran, S., 2020. Evolutionary divergence of novel open reading frames in cichlids speciation. Sci Rep, v. 10
Doi: http://doi.org/10.1038/s41598-020-78555-0
2019
Matsushima, W., Herzog, VA., Neumann, T., Gapp, K., Zuber, J., Ameres, SL. and Miska, EA., 2019. Publisher Correction: Sequencing cell-type-specific transcriptomes with SLAM-ITseq. Nat Protoc, v. 14
Doi: http://doi.org/10.1038/s41596-019-0224-9
LeBoeuf, AC., Waridel, P., Brent, CS., Gonçalves, AN., Menin, L., Ortiz, D., Riba-Grognuz, O., Koto, A., Soares, ZG., Privman, E., Miska, EA., Benton, R. and Keller, L., 2019. Oral transfer of chemical cues, growth proteins and hormones in social insects. Elife, v. 8
Doi: http://doi.org/10.7554/eLife.51082
Van Haute, L., Lee, S-Y., McCann, B., Powell, C., Bansal, D., Garone, C., Shin, S., Kim, J-S., Frye, M., Gleeson, J., Miska, E., Rhee, H-W. and Minczuk, M., 2019. NSUN2 introduces 5-methylcytosines in mammalian mitochondrial tRNAs
Doi: 10.1101/626960
Lin, C-C., Suen, KM., Jeffrey, P-A., Wieteska, L., Stainthorp, A., Seiler, C., Koss, H., Molina-París, C., Miska, E., Ahmed, Z. and Ladbury, J., 2019. Receptor tyrosine kinases regulate signal transduction through a liquid–liquid phase separated state
Doi: 10.1101/783720
Bezler, A., Braukmann, F., West, SM., Duplan, A., Conconi, R., Schütz, F., Gönczy, P., Piano, F., Gunsalus, K., Miska, EA. and Keller, L., 2019. Tissue- and sex-specific small RNAomes reveal sex differences in response to the environment. PLoS Genet, v. 15
Doi: http://doi.org/10.1371/journal.pgen.1007905
Akay, A., Jordan, D., Navarro, IC., Wrzesinski, T., Ponting, CP., Miska, EA. and Haerty, W., 2019. Identification of functional long non-coding RNAs in C. elegans. BMC Biol, v. 17
Doi: http://doi.org/10.1186/s12915-019-0635-7
Maori, E., Navarro, IC., Boncristiani, H., Seilly, DJ., Rudolph, KLM., Sapetschnig, A., Lin, C-C., Ladbury, JE., Evans, JD., Heeney, JL. and Miska, EA., 2019. A Secreted RNA Binding Protein Forms RNA-Stabilizing Granules in the Honeybee Royal Jelly Molecular Cell,
Doi: 10.1016/j.molcel.2019.03.010
2018
Lewis, SH., Quarles, KA., Yang, Y., Tanguy, M., Frezal, L., Smith, SA., Sharma, PP., Cordaux, R., Gilbert, C., Giraud, I., Collins, DH., Zamore, PD., Miska, EA., Sarkies, P. and Jiggins, FM., 2018. Pan-arthropod analysis reveals somatic piRNAs as an ancestral defence against transposable elements Nature Ecology & Evolution, v. 2
Doi: 10.1038/s41559-017-0403-4
Frézal, L., Demoinet, E., Braendle, C., Miska, E. and Félix, M-A., 2018. Natural Genetic Variation in a Multigenerational Phenotype in C. elegans. Curr Biol, v. 28
Doi: http://doi.org/10.1016/j.cub.2018.05.091
Malinsky, M., Svardal, H., Tyers, AM., Miska, EA., Genner, MJ., Turner, GF. and Durbin, R., 2018. Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow. Nat Ecol Evol, v. 2
Doi: 10.1038/s41559-018-0717-x
Weng, C., Kosalka, J., Berkyurek, AC., Stempor, P., Feng, X., Mao, H., Zeng, C., Li, W-J., Yan, Y-H., Dong, M-Q., Morero, NR., Zuliani, C., Barabas, O., Ahringer, J., Guang, S. and Miska, EA., 2018. The USTC co-opts an ancient machinery to drive piRNA transcription in C. elegans. Genes and Development,
Doi: 10.1101/gad.319293.118
2017
McMurchy, AN., Stempor, P., Gaarenstroom, T., Wysolmerski, B., Dong, Y., Aussianikava, D., Appert, A., Huang, N., Kolasinska-Zwierz, P., Sapetschnig, A., Miska, EA. and Ahringer, J., 2017. A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress. Elife, v. 6
Doi: 10.7554/eLife.21666
Akay, A., Di Domenico, T., Suen, KM., Nabih, A., Parada, GE., Larance, M., Medhi, R., Berkyurek, , Zhang, X., Wedeles, CJ., Rudolph, , Engelhardt, J., Hemberg, M., Ma, P., Lamond, AI., Claycomb, JM. and Miska, , 2017. The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription Developmental Cell, v. 42
Doi: http://doi.org/10.1016/j.devcel.2017.07.002
McMurchy, AN., Stempor, P., Gaarenstroom, T., Wysolmerski, B., Dong, Y., Aussianikava, D., Appert, A., Huang, N., Kolasinska-Zwierz, P., Sapetschnig, A., Miska, EA. and Ahringer, J., 2017. Correction: A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress. Elife, v. 6
Doi: 10.7554/eLife.32516
Cording, A., Gormally, M., Bond, PJ., Carrington, M., Balasubramanian, S., Miska, EA. and Thomas, B., 2017. Selective inhibitors of trypanosomal uridylyl transferase RET1 establish druggability of RNA post-transcriptional modifications. RNA Biol, v. 14
Doi: 10.1080/15476286.2015.1137422
Huber, SM., van Delft, P., Tanpure, A., Miska, EA. and Balasubramanian, S., 2017. 2'-$\textit{0}$-Methyl-5-hydroxymethylcytidine: A Second Oxidative Derivative of 5-Methylcytidine in RNA Journal of the American Chemical Society, v. 139
Doi: http://doi.org/10.1021/jacs.6b12180
Bellon, A., Iyer, A., Bridi, S., Lee, FCY., Ovando-Vázquez, C., Corradi, E., Longhi, S., Roccuzzo, M., Strohbuecker, S., Naik, S., Sarkies, P., Miska, E., Abreu-Goodger, C., Holt, CE. and Baudet, M-L., 2017. miR-182 Regulates Slit2-Mediated Axon Guidance by Modulating the Local Translation of a Specific mRNA Cell Reports, v. 18
Doi: http://doi.org/10.1016/j.celrep.2016.12.093
Balasubramanian, S., van Delft, P., Akay, A., Bueschl, C., Rudolph, K., Domenico, T., Schuhmacher, R. and Miska, E., 2017. The profile and dynamics of RNA modifications in animals Chembiochem : a European journal of chemical biology, v. 18
Doi: http://doi.org/10.1002/cbic.201700093
2016
Gapp, K. and Miska, EA., 2016. tRNA fragments: novel players in intergenerational inheritance. Cell Res, v. 26
Doi: 10.1038/cr.2016.24
Rainey, SM., Martinez, J., McFarlane, M., Juneja, P., Sarkies, P., Lulla, A., Schnettler, E., Varjak, M., Merits, A., Miska, EA., Jiggins, FM. and Kohl, A., 2016. Wolbachia Blocks Viral Genome Replication Early in Infection without a Transcriptional Response by the Endosymbiont or Host Small RNA Pathways. PLoS Pathog, v. 12
Doi: 10.1371/journal.ppat.1005536
Lightfoot, HL., Miska, EA. and Balasubramanian, S., 2016. Identification of small molecule inhibitors of the Lin28-mediated blockage of pre-let-7g processing Organic and Biomolecular Chemistry, v. 14
Doi: http://doi.org/10.1039/c6ob01945e
LeBoeuf, AC., Waridel, P., Brent, CS., Gonçalves, AN., Menin, L., Ortiz, D., Riba-Grognuz, O., Koto, A., Soares, ZG., Privman, E., Miska, EA., Benton, R. and Keller, L., 2016. Oral transfer of chemical cues, growth proteins and hormones in social insects. Elife, v. 5
Doi: http://doi.org/10.7554/eLife.20375
2015
Huber, SM., van Delft, P., Mendil, L., Bachman, M., Smollett, K., Werner, F., Miska, EA. and Balasubramanian, S., 2015. Formation and abundance of 5-hydroxymethylcytosine in RNA. Chembiochem, v. 16
Doi: http://doi.org/10.1002/cbic.201500013
Sarkies, P., Selkirk, ME., Jones, JT., Blok, V., Boothby, T., Goldstein, B., Hanelt, B., Ardila-Garcia, A., Fast, NM., Schiffer, PM., Kraus, C., Taylor, MJ., Koutsovoulos, G., Blaxter, ML. and Miska, EA., 2015. Ancient and novel small RNA pathways compensate for the loss of piRNAs in multiple independent nematode lineages. PLoS Biol, v. 13
Doi: 10.1371/journal.pbio.1002061
Sapetschnig, A., Sarkies, P., Lehrbach, NJ. and Miska, EA., 2015. Tertiary siRNAs mediate paramutation in C. elegans. PLoS Genet, v. 11
Doi: 10.1371/journal.pgen.1005078
Akay, A., Sarkies, P. and Miska, EA., 2015. E. coli OxyS non-coding RNA does not trigger RNAi in C. elegans. Sci Rep, v. 5
Doi: 10.1038/srep09597
Ashe, A., Sarkies, P., Le Pen, J., Tanguy, M. and Miska, EA., 2015. Antiviral RNA Interference against Orsay Virus Is neither Systemic nor Transgenerational in Caenorhabditis elegans. J Virol, v. 89
Doi: http://doi.org/10.1128/JVI.03664-14
Malinsky, M., Challis, RJ., Tyers, AM., Schiffels, S., Terai, Y., Ngatunga, BP., Miska, EA., Durbin, R., Genner, MJ. and Turner, GF., 2015. Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake. Science, v. 350
Doi: 10.1126/science.aac9927
2014
Peden, AS., Mac, P., Fei, Y-J., Castro, C., Jiang, G., Murfitt, KJ., Miska, EA., Griffin, JL., Ganapathy, V. and Jorgensen, EM., 2014. Betaine acts on a ligand-gated ion channel in the nervous system of the nematode C. elegans (vol 16, pg 1794, 2013) NATURE NEUROSCIENCE, v. 17
Doi: 10.1038/nn1214-1840f
Weick, E-M., Sarkies, P., Silva, N., Chen, RA., Moss, SMM., Cording, AC., Ahringer, J., Martinez-Perez, E. and Miska, EA., 2014. PRDE-1 is a nuclear factor essential for the biogenesis of Ruby motif-dependent piRNAs in C. elegans. Genes Dev, v. 28
Doi: 10.1101/gad.238105.114
Gapp, K., Jawaid, A., Sarkies, P., Bohacek, J., Pelczar, P., Prados, J., Farinelli, L., Miska, E. and Mansuy, IM., 2014. Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice. Nat Neurosci, v. 17
Doi: 10.1038/nn.3695
Simon, M., Sarkies, P., Ikegami, K., Doebley, A-L., Goldstein, LD., Mitchell, J., Sakaguchi, A., Miska, EA. and Ahmed, S., 2014. Reduced insulin/IGF-1 signaling restores germ cell immortality to Caenorhabditis elegans Piwi mutants. Cell Rep, v. 7
Doi: 10.1016/j.celrep.2014.03.056
Sarkies, P. and Miska, EA., 2014. Small RNAs break out: the molecular cell biology of mobile small RNAs. Nat Rev Mol Cell Biol, v. 15
Doi: 10.1038/nrm3840
Bassett, AR., Akhtar, A., Barlow, DP., Bird, AP., Brockdorff, N., Duboule, D., Ephrussi, A., Ferguson-Smith, AC., Gingeras, TR., Haerty, W., Higgs, DR., Miska, EA. and Ponting, CP., 2014. Considerations when investigating lncRNA function in vivo. Elife, v. 3
Doi: 10.7554/eLife.03058
Brawand, D., Wagner, CE., Li, YI., Malinsky, M., Keller, I., Fan, S., Simakov, O., Ng, AY., Lim, ZW., Bezault, E., Turner-Maier, J., Johnson, J., Alcazar, R., Noh, HJ., Russell, P., Aken, B., Alföldi, J., Amemiya, C., Azzouzi, N., Baroiller, J-F., Barloy-Hubler, F., Berlin, A., Bloomquist, R., Carleton, KL., Conte, MA., D'Cotta, H., Eshel, O., Gaffney, L., Galibert, F., Gante, HF., Gnerre, S., Greuter, L., Guyon, R., Haddad, NS., Haerty, W., Harris, RM., Hofmann, HA., Hourlier, T., Hulata, G., Jaffe, DB., Lara, M., Lee, AP., MacCallum, I., Mwaiko, S., Nikaido, M., Nishihara, H., Ozouf-Costaz, C., Penman, DJ., Przybylski, D., Rakotomanga, M., Renn, SCP., Ribeiro, FJ., Ron, M., Salzburger, W., Sanchez-Pulido, L., Santos, ME., Searle, S., Sharpe, T., Swofford, R., Tan, FJ., Williams, L., Young, S., Yin, S., Okada, N., Kocher, TD., Miska, EA., Lander, ES., Venkatesh, B., Fernald, RD., Meyer, A., Ponting, CP., Streelman, JT., Lindblad-Toh, K., Seehausen, O. and Di Palma, F., 2014. The genomic substrate for adaptive radiation in African cichlid fish. Nature, v. 513
Doi: 10.1038/nature13726
Weick, E-M. and Miska, EA., 2014. piRNAs: from biogenesis to function. Development, v. 141
Doi: 10.1242/dev.094037
Sakaguchi, A., Sarkies, P., Simon, M., Doebley, A-L., Goldstein, LD., Hedges, A., Ikegami, K., Alvares, SM., Yang, L., LaRocque, JR., Hall, J., Miska, EA. and Ahmed, S., 2014. Caenorhabditis elegans RSD-2 and RSD-6 promote germ cell immortality by maintaining small interfering RNA populations. Proc Natl Acad Sci U S A, v. 111
Doi: 10.1073/pnas.1406131111
Peden, AS., Mac, P., Fei, YJ., Castro, C., Jiang, G., Murfitt, KJ., Miska, EA., Griffin, JL., Ganapathy, V. and Jorgensen, EM., 2014. Erratum: Betaine acts on a ligand-gated ion channel in the nervous system of the nematode C. elegans. Nat Neurosci, v. 17
Doi: http://doi.org/10.1038/nn1214-1840f
Harding, JL., Horswell, S., Heliot, C., Armisen, J., Zimmerman, LB., Luscombe, NM., Miska, EA. and Hill, CS., 2014. Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements. Genome Res, v. 24
Doi: 10.1101/gr.144469.112
2013
Peden, AS., Mac, P., Fei, Y-J., Castro, C., Jiang, G., Murfitt, KJ., Miska, EA., Griffin, JL., Ganapathy, V. and Jorgensen, EM., 2013. Betaine acts on a ligand-gated ion channel in the nervous system of the nematode C. elegans. Nat Neurosci, v. 16
Doi: 10.1038/nn.3575
Akay, A., Craig, A., Lehrbach, N., Larance, M., Pourkarimi, E., Wright, JE., Lamond, A., Miska, E. and Gartner, A., 2013. RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans. Open Biol, v. 3
Doi: 10.1098/rsob.130151
Castro, C., Krumsiek, J., Lehrbach, NJ., Murfitt, SA., Miska, EA. and Griffin, JL., 2013. A study of Caenorhabditis elegans DAF-2 mutants by metabolomics and differential correlation networks. Mol Biosyst, v. 9
Doi: http://doi.org/10.1039/c3mb25539e
Dvinge, H., Git, A., Gräf, S., Salmon-Divon, M., Curtis, C., Sottoriva, A., Zhao, Y., Hirst, M., Armisen, J., Miska, EA., Chin, S-F., Provenzano, E., Turashvili, G., Green, A., Ellis, I., Aparicio, S. and Caldas, C., 2013. The shaping and functional consequences of the microRNA landscape in breast cancer. Nature, v. 497
Doi: http://doi.org/10.1038/nature12108
Sarkies, P., Ashe, A., Le Pen, J., McKie, MA. and Miska, EA., 2013. Competition between virus-derived and endogenous small RNAs regulates gene expression in Caenorhabditis elegans. Genome Res, v. 23
Doi: 10.1101/gr.153296.112
Sarkies, P. and Miska, EA., 2013. RNAi pathways in the recognition of foreign RNA: antiviral responses and host-parasite interactions in nematodes. Biochem Soc Trans, v. 41
Doi: 10.1042/BST20130021
Mok, Y., Schwierzeck, V., Thomas, DC., Vigorito, E., Rayner, TF., Jarvis, LB., Prosser, HM., Bradley, A., Withers, DR., Mårtensson, I-L., Corcoran, LM., Blenkiron, C., Miska, EA., Lyons, PA. and Smith, KGC., 2013. MiR-210 is induced by Oct-2, regulates B cells, and inhibits autoantibody production. J Immunol, v. 191
Doi: 10.4049/jimmunol.1301289
Ashe, A., Bélicard, T., Le Pen, J., Sarkies, P., Frézal, L., Lehrbach, NJ., Félix, M-A. and Miska, EA., 2013. A deletion polymorphism in the Caenorhabditis elegans RIG-I homolog disables viral RNA dicing and antiviral immunity. Elife, v. 2
Doi: 10.7554/eLife.00994
Tanguy, M. and Miska, EA., 2013. Antiviral RNA interference in animals: piecing together the evidence. Nat Struct Mol Biol, v. 20
Doi: http://doi.org/10.1038/nsmb.2708
2012
Castro, C., Sar, F., Shaw, WR., Mishima, M., Miska, EA. and Griffin, JL., 2012. A metabolomic strategy defines the regulation of lipid content and global metabolism by Δ9 desaturases in Caenorhabditis elegans. BMC Genomics, v. 13
Doi: http://doi.org/10.1186/1471-2164-13-36
Vasquez-Rifo, A., Jannot, G., Armisen, J., Labouesse, M., Bukhari, SIA., Rondeau, EL., Miska, EA. and Simard, MJ., 2012. Developmental characterization of the microRNA-specific C. elegans Argonautes alg-1 and alg-2. PLoS One, v. 7
Doi: http://doi.org/10.1371/journal.pone.0033750
Jovanovic, M., Reiter, L., Clark, A., Weiss, M., Picotti, P., Rehrauer, H., Frei, A., Neukomm, LJ., Kaufman, E., Wollscheid, B., Simard, MJ., Miska, EA., Aebersold, R., Gerber, AP. and Hengartner, MO., 2012. RIP-chip-SRM--a new combinatorial large-scale approach identifies a set of translationally regulated bantam/miR-58 targets in C. elegans. Genome Res, v. 22
Doi: http://doi.org/10.1101/gr.133330.111
Bagijn, MP., Goldstein, LD., Sapetschnig, A., Weick, E-M., Bouasker, S., Lehrbach, NJ., Simard, MJ. and Miska, EA., 2012. Function, targets, and evolution of Caenorhabditis elegans piRNAs. Science, v. 337
Doi: http://doi.org/10.1126/science.1220952
Ashe, A., Sapetschnig, A., Weick, E-M., Mitchell, J., Bagijn, MP., Cording, AC., Doebley, A-L., Goldstein, LD., Lehrbach, NJ., Le Pen, J., Pintacuda, G., Sakaguchi, A., Sarkies, P., Ahmed, S. and Miska, EA., 2012. piRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans. Cell, v. 150
Doi: http://doi.org/10.1016/j.cell.2012.06.018
Kamminga, LM., van Wolfswinkel, JC., Luteijn, MJ., Kaaij, LJT., Bagijn, MP., Sapetschnig, A., Miska, EA., Berezikov, E. and Ketting, RF., 2012. Differential impact of the HEN1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans. PLoS Genet, v. 8
Doi: http://doi.org/10.1371/journal.pgen.1002702
Lehrbach, NJ., Castro, C., Murfitt, KJ., Abreu-Goodger, C., Griffin, JL. and Miska, EA., 2012. Post-developmental microRNA expression is required for normal physiology, and regulates aging in parallel to insulin/IGF-1 signaling in C. elegans. RNA, v. 18
Doi: http://doi.org/10.1261/rna.035402.112
2011
Félix, M-A., Ashe, A., Piffaretti, J., Wu, G., Nuez, I., Bélicard, T., Jiang, Y., Zhao, G., Franz, CJ., Goldstein, LD., Sanroman, M., Miska, EA. and Wang, D., 2011. Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses. PLoS Biol, v. 9
Doi: http://doi.org/10.1371/journal.pbio.1000586
Lightfoot, HL., Bugaut, A., Armisen, J., Lehrbach, NJ., Miska, EA. and Balasubramanian, S., 2011. A LIN28-dependent structural change in pre-let-7g directly inhibits dicer processing. Biochemistry, v. 50
Doi: http://doi.org/10.1021/bi200851d
2010
Jovanovic, M., Reiter, L., Picotti, P., Lange, V., Bogan, E., Hurschler, BA., Blenkiron, C., Lehrbach, NJ., Ding, XC., Weiss, M., Schrimpf, SP., Miska, EA., Grosshans, H., Aebersold, R. and Hengartner, MO., 2010. A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans. Nat Methods, v. 7
Doi: http://doi.org/10.1038/nmeth.1504
Hanina, SA., Mifsud, W., Down, TA., Hayashi, K., O'Carroll, D., Lao, KQ., Miska, EA. and Surani, MA., 2010. Genome-Wide Identification of Targets and Function of Individual MicroRNAs in Mouse Embryonic Stem Cells PLOS GENET, v. 6
Doi: 10.1371/journal.pgen.1001163
Jovanovic, M., Reiter, L., Picotti, P., Lange, V., Bogan, E., Hurschler, BA., Blenkiron, C., Lehrbach, NJ., Ding, XC., Weiss, M., Schrimpf, SP., Miska, EA., Grosshans, H., Aebersold, R. and Hengartner, MO., 2010. A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans (vol 7, pg 837, 2010) NAT METHODS, v. 7
Doi: http://doi.org/10.1038/nmeth1210-1025a
Lehrbach, NJ. and Miska, EA., 2010. REGULATION OF pre-miRNA PROCESSING ADV EXP MED BIOL, v. 700
Jovanovic, M., Reiter, L., Picotti, P., Lange, V., Bogan, E., Hurschler, BA., Blenkiron, C., Lehrbach, NJ., Ding, XC., Weiss, M., Schrimpf, SP., Miska, EA., Großhans, H., Aebersold, R. and Hengartner, MO., 2010. Erratum: A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans (Nature Methods (2010) 7 (837-842)) Nature Methods, v. 7
Doi: http://doi.org/10.1038/nmeth1210-1025a
Shaw, WR., Armisen, J., Lehrbach, NJ. and Miska, EA., 2010. The conserved miR-51 microRNA family is redundantly required for embryonic development and pharynx attachment in Caenorhabditis elegans. Genetics, v. 185
Doi: http://doi.org/10.1534/genetics.110.117515
Clark, AM., Goldstein, LD., Tevlin, M., Tavaré, S., Shaham, S. and Miska, EA., 2010. The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans. Nucleic Acids Res, v. 38
Doi: http://doi.org/10.1093/nar/gkq083
2009
Wilczynska, A., Minshall, N., Armisen, J., Miska, EA. and Standart, N., 2009. Two Piwi proteins, Xiwi and Xili, are expressed in the Xenopus female germline. RNA, v. 15
Doi: http://doi.org/10.1261/rna.1422509
Armisen, J., Gilchrist, MJ., Wilczynska, A., Standart, N. and Miska, EA., 2009. Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis. Genome Res, v. 19
Doi: http://doi.org/10.1101/gr.093054.109
Lehrbach, NJ., Armisen, J., Lightfoot, HL., Murfitt, KJ., Bugaut, A., Balasubramanian, S. and Miska, EA., 2009. LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans. Nat Struct Mol Biol, v. 16
Doi: http://doi.org/10.1038/nsmb.1675
Avril-Sassen, S., Goldstein, LD., Stingl, J., Blenkiron, C., Le Quesne, J., Spiteri, I., Karagavriilidou, K., Watson, CJ., Tavaré, S., Miska, EA. and Caldas, C., 2009. Characterisation of microRNA expression in post-natal mouse mammary gland development. BMC Genomics, v. 10
Doi: 10.1186/1471-2164-10-548
2008
Lehrbach, NJ. and Miska, EA., 2008. Functional genomic, computational and proteomic analysis of C. elegans microRNAs. Brief Funct Genomic Proteomic, v. 7
Doi: http://doi.org/10.1093/bfgp/eln024
Atherton, HJ., Jones, OAH., Malik, S., Miska, EA. and Griffin, JL., 2008. A comparative metabolomic study of NHR-49 in Caenorhabditis elegans and PPAR-alpha in the mouse. FEBS Lett, v. 582
Doi: http://doi.org/10.1016/j.febslet.2008.04.020
Das, PP., Bagijn, MP., Goldstein, LD., Woolford, JR., Lehrbach, NJ., Sapetschnig, A., Buhecha, HR., Gilchrist, MJ., Howe, KL., Stark, R., Matthews, N., Berezikov, E., Ketting, RF., Tavaré, S. and Miska, EA., 2008. Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline. Mol Cell, v. 31
Doi: http://doi.org/10.1016/j.molcel.2008.06.003
Lykke-Andersen, K., Gilchrist, MJ., Grabarek, JB., Das, P., Miska, E. and Zernicka-Goetz, M., 2008. Maternal Argonaute 2 is essential for early mouse development at the maternal-zygotic transition. Mol Biol Cell, v. 19
Doi: http://doi.org/10.1091/mbc.e08-02-0219
Hayashi, K., Chuva de Sousa Lopes, SM., Kaneda, M., Tang, F., Hajkova, P., Lao, K., O'Carroll, D., Das, PP., Tarakhovsky, A., Miska, EA. and Surani, MA., 2008. MicroRNA biogenesis is required for mouse primordial germ cell development and spermatogenesis. PLoS One, v. 3
Doi: 10.1371/journal.pone.0001738
Choi, PS., Zakhary, L., Choi, W-Y., Caron, S., Alvarez-Saavedra, E., Miska, EA., McManus, M., Harfe, B., Giraldez, AJ., Horvitz, HR., Schier, AF. and Dulac, C., 2008. Members of the miRNA-200 family regulate olfactory neurogenesis. Neuron, v. 57
Doi: http://doi.org/10.1016/j.neuron.2007.11.018
2007
Lujambic, A., Ropero, S., Ballestar, E., Fraga, MF., Cerrato, C., Setien, F., Casado, S., Suarez-Gauthier, A., Sanchez-Cespedes, M., Git, A., Spiteri, I., Das, PP., Caldas, C., Miska, E. and Esteller, M., 2007. Genetic unmasking of an epigenetically silenced microRNA in human cancer cells (vol 67, pg 1424, 2007) CANCER RES, v. 67
Miska, EA., Alvarez-Saavedra, E., Abbott, AL., Lau, NC., Hellman, AB., McGonagle, SM., Bartel, DP., Ambros, VR. and Horvitz, HR., 2007. Most Caenorhabditis elegans microRNAs are individually not essential for development or viability. PLoS genetics, v. 3
Doi: http://doi.org/10.1371/journal.pgen.0030215
Blenkiron, C. and Miska, EA., 2007. miRNAs in cancer: approaches, aetiology, diagnostics and therapy. Hum Mol Genet, v. 16 Spec No 1
Doi: http://doi.org/10.1093/hmg/ddm056
Lujambio, A., Ropero, S., Ballestar, E., Fraga, MF., Cerrato, C., Setién, F., Casado, S., Suarez-Gauthier, A., Sanchez-Cespedes, M., Git, A., Spiteri, I., Das, PP., Caldas, C., Miska, E. and Esteller, M., 2007. Genetic unmasking of an epigenetically silenced microRNA in human cancer cells. Cancer Res, v. 67
Doi: http://doi.org/10.1158/0008-5472.CAN-06-4218
O'Carroll, D., Mecklenbrauker, I., Das, PP., Santana, A., Koenig, U., Enright, AJ., Miska, EA. and Tarakhovsky, A., 2007. A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway. Genes Dev, v. 21
Doi: 10.1101/gad.1565607
Rodriguez, A., Vigorito, E., Clare, S., Warren, MV., Couttet, P., Soond, DR., van Dongen, S., Grocock, RJ., Das, PP., Miska, EA., Vetrie, D., Okkenhaug, K., Enright, AJ., Dougan, G., Turner, M. and Bradley, A., 2007. Requirement of bic/microRNA-155 for normal immune function. Science, v. 316
Doi: 10.1126/science.1139253
Miska, EA., Alvarez-Saavedra, E., Abbott, AL., Lau, NC., Hellman, AB., McGonagle, SM., Bartel, DP., Ambros, VR. and Horvitz, HR., 2007. Most Caenorhabditis elegans microRNAs are individually not essential for development or viability. PLoS Genet, v. 3
Doi: http://doi.org/10.1371/journal.pgen.0030215
Vigorito, E., Perks, KL., Abreu-Goodger, C., Bunting, S., Xiang, Z., Kohlhaas, S., Das, PP., Miska, EA., Rodriguez, A., Bradley, A., Smith, KGC., Rada, C., Enright, AJ., Toellner, K-M., Maclennan, ICM. and Turner, M., 2007. microRNA-155 regulates the generation of immunoglobulin class-switched plasma cells. Immunity, v. 27
Doi: 10.1016/j.immuni.2007.10.009
Miska, EA. and Ahringer, J., 2007. RNA interference has second helpings. Nat Biotechnol, v. 25
Doi: 10.1038/nbt0307-302
Blenkiron, C., Goldstein, LD., Thorne, NP., Spiteri, I., Chin, S-F., Dunning, MJ., Barbosa-Morais, NL., Teschendorff, AE., Green, AR., Ellis, IO., Tavaré, S., Caldas, C. and Miska, EA., 2007. MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype. Genome Biol, v. 8
Doi: http://doi.org/10.1186/gb-2007-8-10-r214
2006
Abbott, AL., Alvarez-Saavedra, E., Miska, EA., Lau, NC., Bartel, DP., Horvitz, HR. and Ambros, V., 2006. Erratum: The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans (Developmental Cell (2005) vol. 9 (403-414) 10.1016/ j.devcel.2006.01.010.) Developmental Cell, v. 10
Doi: http://doi.org/10.1016/j.devcel.2006.01.010
Abbott, AL., Alvarez-Saavedra, E., Miska, EA., Lau, NC., Bartel, DP., Horvitz, HR. and Ambros, V., 2006. The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans (vol 9, pg 403, 2005) DEV CELL, v. 10
Doi: http://doi.org/10.1016/j.devcel.2006.01.010
2005
Alvarez-Saavedra, EA. and Miska, EA., 2005. Caenorhabditis elegans and friends in Los Angeles. Genome biology, v. 6
Alvarez-Saavedra, EA. and Miska, EA., 2005. Caenorhabditis elegans and friends in Los Angeles. Genome Biol, v. 6
Doi: 10.1186/gb-2005-6-11-358
Wienholds, E., Kloosterman, WP., Miska, E., Alvarez-Saavedra, E., Berezikov, E., de Bruijn, E., Horvitz, HR., Kauppinen, S. and Plasterk, RHA., 2005. MicroRNA expression in zebrafish embryonic development. Science, v. 309
Doi: http://doi.org/10.1126/science.1114519
Wienholds, E., Kloosterman, WP., Miska, E., Alvarez-Saavedra, E., Berezikov, E., de Bruijn, E., Horvitz, HR., Kauppinen, S. and Plasterk, RHA., 2005. MicroRNA expression in zebrafish embryonic development MECH DEVELOP, v. 122
Wienholds, E., Kloosterman, WP., Miska, E., Alvarez-Saavedra, E., Berezikov, E., De Bruijn, E., Horvitz, HR., Kauppinen, S. and Plasterk, RHA., 2005. Cell biology: MicroRNA expression in zebrafish embryonic development Science, v. 309
Doi: http://doi.org/10.1126/science.1114519
Abbott, AL., Alvarez-Saavedra, E., Miska, EA., Lau, NC., Bartel, DP., Horvitz, HR. and Ambros, V., 2005. The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans. Dev Cell, v. 9
Doi: http://doi.org/10.1016/j.devcel.2005.07.009
Lu, J., Getz, G., Miska, EA., Alvarez-Saavedra, E., Lamb, J., Peck, D., Sweet-Cordero, A., Ebert, BL., Mak, RH., Ferrando, AA., Downing, JR., Jacks, T., Horvitz, HR. and Golub, TR., 2005. MicroRNA expression profiles classify human cancers. Nature, v. 435
Doi: http://doi.org/10.1038/nature03702
2004
Miska, EA., Alvarez-Saavedra, E., Townsend, M., Yoshii, A., Sestan, N., Rakic, P., Constantine-Paton, M. and Horvitz, HR., 2004. Microarray analysis of microRNA expression in the developing mammalian brain. Genome Biol, v. 5
Doi: http://doi.org/10.1186/gb-2004-5-9-r68
2002
Kirsh, O., Seeler, J-S., Pichler, A., Gast, A., Müller, S., Miska, E., Mathieu, M., Harel-Bellan, A., Kouzarides, T., Melchior, F. and Dejean, A., 2002. The SUMO E3 ligase RanBP2 promotes modification of the HDAC4 deacetylase. EMBO J, v. 21
Doi: 10.1093/emboj/21.11.2682
Wolf, D., Rodova, M., Miska, EA., Calvet, JP. and Kouzarides, T., 2002. Acetylation of beta-catenin by CREB-binding protein (CBP). J Biol Chem, v. 277
Doi: 10.1074/jbc.M201196200
2001
Bannister, AJ., Zegerman, P., Partridge, JF., Miska, EA., Thomas, JO., Allshire, RC. and Kouzarides, T., 2001. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain NATURE, v. 410
Miska, EA., Langley, E., Wolf, D., Karlsson, C., Pines, J. and Kouzarides, T., 2001. Differential localization of HDAC4 orchestrates muscle differentiation NUCLEIC ACIDS RES, v. 29
2000
Bannister, AJ., Miska, EA., Görlich, D. and Kouzarides, T., 2000. Acetylation of importin-alpha nuclear import factors by CBP/p300. Curr Biol, v. 10
Doi: 10.1016/s0960-9822(00)00445-0
Bannister, AJ. and Miska, EA., 2000. Regulation of gene expression by transcription factor acetylation. Cell Mol Life Sci, v. 57
Doi: http://doi.org/10.1007/pl00000758
Huang, EY., Zhang, J., Miska, EA., Guenther, MG., Kouzarides, T. and Lazar, MA., 2000. Nuclear receptor corepressors partner with class II histone deacetylases in a Sin3-independent repression pathway. Genes Dev, v. 14
Grimes, JA., Nielsen, SJ., Battaglioli, E., Miska, EA., Speh, JC., Berry, DL., Atouf, F., Holdener, BC., Mandel, G. and Kouzarides, T., 2000. The co-repressor mSin3A is a functional component of the REST-CoREST repressor complex. J Biol Chem, v. 275
Doi: 10.1074/jbc.275.13.9461
1999
Brehm, A., Nielsen, SJ., Miska, EA., McCance, DJ., Reid, JL., Bannister, AJ. and Kouzarides, T., 1999. The E7 oncoprotein associates with Mi2 and histone deacetylase activity to promote cell growth. EMBO J, v. 18
Doi: 10.1093/emboj/18.9.2449
Sparrow, DB., Miska, EA., Langley, E., Reynaud-Deonauth, S., Kotecha, S., Towers, N., Spohr, G., Kouzarides, T. and Mohun, TJ., 1999. MEF-2 function is modified by a novel co-repressor, MITR. EMBO J, v. 18
Doi: 10.1093/emboj/18.18.5085
Miska, EA., Karlsson, C., Langley, E., Nielsen, SJ., Pines, J. and Kouzarides, T., 1999. HDAC4 deacetylase associates with and represses the MEF2 transcription factor. EMBO J, v. 18
Doi: 10.1093/emboj/18.18.5099
1998
Brehm, A., Miska, EA., McCance, DJ., Reid, JL., Bannister, AJ. and Kouzarides, T., 1998. Retinoblastoma protein recruits histone deacetylase to repress transcription. Nature, v. 391
Doi: 10.1038/35404
Berkyurek, AC., Furlan, G., Lampersberger, L., Beltran, T., Weick, E-M., Nischwitz, E., Navarro, IC., Braukmann, F., Akay, A., Price, J., Butter, F., Sarkies, P. and Miska, E., The RNA Polymerase II subunit RPB-9 recruits Integrator to terminate C. elegans piRNA transcription The EMBO Journal,
Matsushima, W., Herzog, VA., Neumann, T., Gapp, K., Zuber, J., Ameres, SL. and Miska, EA., Sequencing cell-type-specific transcriptomes with SLAM-ITseq. Nature Protocols,
Doi: http://doi.org/10.1038/s41596-019-0179-x
Van Haute, L., Lee, S-Y., McCann, BJ., Powell, CA., Bansal, D., Vasiliauskaitė, L., Garone, C., Shin, S., Kim, J-S., Frye, M., Gleeson, JG., Miska, EA., Rhee, H-W. and Minczuk, M., NSUN2 introduces 5-methylcytosines in mammalian mitochondrial tRNAs. Nucleic Acids Research,
Doi: http://doi.org/10.1093/nar/gkz559
Lampersberger, L., Conte, F., Ghosh, S., Xiao, Y., Price, J., Jordan, D., Matus, DQ., Sarkies, P., Beli, P., Miska, EA. and Burton, NO., Loss of the E3 ubiquitin ligases UBR-5 or HECD-1 restores Caenorhabditis elegans development in the absence of SWI/SNF function. Proc Natl Acad Sci U S A, v. 120
Doi: 10.1073/pnas.2217992120
tanguy, M., Veron, L., Stempor, P., Ahringer, J., Sarkies, P. and Miska, EA., An alternative STAT signaling pathway acts in viral immunity in Caenorhabditis elegans mBio,
Miska, EA., Le Pen, J., Kosalka, J., Kneuss, E., Di Domenico, T. and Rudolph, K., Terminal uridylytransferases target RNA viruses as part of the innate immune system in animals Nature Structural and Molecular Biology,
Burton, N., Riccio, C., Dallaire, A., Price, J., Jenkins, B., Koulman, A. and Miska, E., Cysteine synthases CYSL-1 and CYSL-2 mediate C. elegans heritable adaptation to P. vranovensis infection Nature Communications,
Doi: http://doi.org/10.1101/675132
Matsushima, W., Herzog, V., Neumann, T., Gapp, K., Zuber, J., Ameres, S. and Miska, E., SLAM-ITseq: Sequencing cell type-specific transcriptomes without cell sorting Development,
Huch Ortega, M., Aloia, L., Miska, E. and Brand, A., Epigenetic remodelling licences adult cholangiocytes for organoid formation and liver regeneration Nature Cell Biology,
Doi: 10.1038/s41556-019-0402-6
Matsushima, W., Brink, K., Schroeder, J., Miska, EA. and Gapp, K., Mature sperm small-RNA profile in the sparrow: implications for transgenerational effects of age on fitness. Environmental Epigenetics, v. 5
Doi: http://doi.org/10.1093/eep/dvz007
Ziv, O., Gabryelska, MM., Lun, ATL., Gebert, LFR., Sheu-Gruttadauria, J., Meredith, LW., Liu, Z-Y., Kwok, CK., Qin, C-F., Macrae, IJ., Goodfellow, I., Marioni, JC., Kudla, G. and Miska, EA., COMRADES determines in vivo RNA structures and interactions Nature Methods,
Gapp, K., Parada, G., Gross, F., Corcoba, A., Kaur, J., Grau, E., Hemberg, M., Bohacek, J. and Miska, E., Single paternal Dexamethasone challenge programs offspring metabolism and reveals multiple candidates in RNA-mediated inheritance iScience,
Baudet, M., Zivraj, KH., Abreu-Goodger, C., Muldal, A., Armisen, J., Blenkiron, C., Goldstein, LD., Miska, E. and Holt, CE., miR-124 acts through coREST to control
the onset of Sema3A sensitivity in navigating retinal growth cones Nature Neuroscience,
Burton, N., Riccio, C., Dallaire, A., Price, J., Jenkins, B., Koulman, A. and Miska, E., Cysteine synthases CYSL-1 and CYSL-2 mediate
C. elegans heritable adaptation to P. vranovensis
infection Nature Communications,
Doi: http://doi.org/10.1038/s41467-020-15555-8
Lewis, S., Ross, L., Bain, S., Pahita, E., Smith, S., Cordeux, R., Miska, E., Lenhard, B., Jiggins, F. and Sarkies, P., Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods PLoS Genetics,
Chandrasekaran, V., Desai, N., Burton, N., Yang, H., Jon, P., Miska, E. and Ramakrishnan, V., Visualising formation of the active site in the mitochondrial ribosome eLife,
Doi: 10.7554/eLife.68806
Vernaz, G., Malinsky, M., Svardal, H., Du, M., Tyers, A., Santos, E., Durbin, R., Genner, M., Turner, G. and Miska, E., Mapping epigenetic divergence in the massive radiation of Lake Malawi cichlid fishes Nature Communications,
Dallaire, A., Manley, BF., Wilkens, M., Bista, I., Quan, C., Evangelisti, E., Bradshaw, CR., Ramakrishna, NB., Schornak, S., Butter, F., Paszkowski, U. and Miska, E., Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus Rhizopagus irregularis Genome Research,
Gapp, K., van Steenwyk, G., Germain, P-L., Matsushima, W., Rudolph, K., Manuella, F., Roszkowski, M., Vernaz, G., Ghosh, T., Pelczar, P., Mansuy, I. and Miska, E., Alterations in sperm long RNA contribute to the epigenetic inheritance of the effects of postnatal trauma Molecular Psychiatry,
Burton, N., Willis, A., Fisher, K., Braukmann, F., Price, J., Stevens, L., Baugh, LR., Reinke, A. and Miska, E., Intergenerational adaptations to stress are evolutionarily conserved, stress-specific, and have deleterious trade-offs eLife,
Doi: 10.7554/eLife.73425
Braukmann, F., Jordan, D., Jenkins, B., Koulman, A. and Miska, E., SID-2 negatively regulates development likely independent of nutritional dsRNA uptake RNA Biology,
Dias De Vasconcelos Almeida, M., Vernaz, G., Putman, A. and Miska, E., Taming transposable elements in vertebrates: from epigenetic silencing to domestication Trends in Genetics,
Miska, EA. and Ferguson-Smith, AC., Transgenerational inheritance: Models and mechanisms of non-DNA sequence-based inheritance. Science, v. 354
Doi: 10.1126/science.aaf4945
Ziv, O., Price, J., Shalamova, L., Kamenova, T., Goodfellow, I., Weber, F. and Miska, E., The short- and long-range RNA-RNA Interactome of SARS-CoV-2 Molecular Cell,
Navarro, IC., Tuorto, F., Jordan, D., Legrand, C., Price, J., Braukmann, F., Hendrick, A., Akay, A., Kotter, A., Helm, M., Lyko, F. and Miska, E., Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans The EMBO Journal,
Venkataraman, GG., Miska, EA. and Jordan, DJ., Processive and Distributive Non-Equilibrium Networks Discriminate in
Alternate Limits Journal of Statistical Mechanics: Theory and Experiment,
Kranse, O., Beasley, H., Adams, S., Pires-daSilva, A., Bell, C., Lilley, C., Urwin, P., Bird, D., Miska, E., Smant, G., Gheysen, G., Jones, J., Viney, M., Abad, P., Maier, T., Baum, T., Siddique, S., Williamson, V., Akay, A. and Eves-Van Den Akker, S., Towards genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles G3: Genes, Genomes, Genetics,
Doi: 10.1093/g3journal/jkaa058
Navarro, IC., Suen, KM., Bensaddek, D., Tanpure, A., Lamond, A., Balasubramanian, S. and Miska, EA., Identification of putative reader proteins of 5-methylcytosine and its derivatives in Caenorhabditis elegans RNA Wellcome Open Research, v. 7
Doi: 10.12688/wellcomeopenres.17893.1
Ramakrishna, NB., Battistoni, G., Surani, A., Hannon, G. and Miska, E., Mouse Primordial Germ Cell-Like Cells Lack piRNAs Developmental Cell,
Doi: 10.1016/j.devcel.2022.11.004
