Publications

Below you will find a list of some selected recent publications that highlight the variety of research being conducted in the lab. If you have any questions or comments please feel free to contact us.

Reprints: Each reference is linked to an abstract and electronic copy of each paper. If your institution does not have access to the journal for a particular reference, please contact Prof Dupree to request a reprint.

Anders N, Wilkinson MD, Lovegrove A, Freeman J, Tryfona T, Pellny TK, Weimar T, Mortimer JC, Stott K, Baker JM, Defoin-Platel M, Shewry PR, Dupree P, Mitchell RAC. (2012) Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses. Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):989-93.

Quinlan RJ, Sweeney MD, Lo Leggio L, Otten H, Poulsen JC, Johansen KS, Krogh KB, Jørgensen CI, Tovborg M, Anthonsen A, Tryfona T, Walter CP, Dupree P, Xu F, Davies GJ, Walton PH. (2011) Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components. Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15079-84.

Marsh JT, Tryfona T, Powers SJ, Stephens E, Dupree P, Shewry PR, Lovegrove A. (2011) Determination of the N-Glycosylation Patterns of Seed Proteins: Applications To Determine the Authenticity and Substantial Equivalence of Genetically Modified (GM) Crops. J Agric Food Chem. 2011 Aug 24;59(16):8779-88.

Brown D, Wightman R, Zhang Z, Gomez LD, Atanassov I, Bukowski JP, Tryfona T, McQueen-Mason SJ, Dupree P, Turner S. (2011) Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall. Plant J. 2011 May;66(3):401-13.

Tryfona T, Liang HC, Kotake T, Kaneko S, Marsh J, Ichinose H, Lovegrove A, Tsumuraya Y, Shewry PR, Stephens E, Dupree P. (2010) Carbohydrate structural analysis of wheat flour arabinogalactan protein. Carbohydr Res. Dec 10;345(18):2648-56.

Mortimer JC, Miles GP, Brown DM, Zhang Z, Segura MP, Weimar T, Yu X, Seffen KA, Stephens E, Turner SR, Dupree P. (2010) Absence of branches from xylan in Arabidopsis gux mutants reveals potential for simplification of lignocellulosic biomass. Proc Natl Acad Sci U S A. Oct 5;107(40):17409-14.

Stephenson AL, Dupree P, Scott SA, Dennis JS. (2010) The environmental and economic sustainability of potential bioethanol from willow in the UK. Bioresour Technol. 2010 Dec;101(24):9612-23.

Segura MP, Lilley KS, Dupree P. (2010) Proteomic complex detection using sedimentation (ProCoDeS): screening for proteins in stable complexes and their candidate interaction partners. Biochem Soc Trans. 2010 Aug;38(4):923-7.

Colleoni C, Linka M, Deschamps P, Handford MG, Dupree P, Weber AP, Ball SG. (2010) Phylogenetic and biochemical evidence supports the recruitment of an ADP-glucose translocator for the export of photosynthate during plastid endosymbiosis. Mol Biol Evol. 2010 Jun 24.

Yamaguchi M, Goué N, Igarashi H, Ohtani M, Nakano Y, Mortimer JC, Nishikubo N, Kubo M, Katayama Y, Kakegawa K, Dupree P, Demura T. (2010) VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system. Plant Physiol. 2010 Jul;153(3):906-14.

Goubet F, Barton CJ, Mortimer JC, Yu X, Zhang Z, Miles GP, Richens J, Liepman AH, Seffen K, Dupree P. (2009) Cell wall glucomannan in Arabidopsis is synthesised by CSLA glycosyltransferases, and influences the progression of embryogenesis. Plant J.60(3):527-38.

Estevez JM, Fernández PV, Kasulin L, Dupree P, Ciancia M. (2009) Chemical and in situ characterization of macromolecular components of the cell walls from the green seaweed Codium fragile. Glycobiology.19(3):212-28.

Brown DM, Zhang Z, Stephens E, Dupree P, Turner SR. (2008) Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in Arabidopsis. Plant J.57(4):732-746.

Sadowski PG, Groen AJ, Dupree P, Lilley KS.(2008)Sub-cellular localization of membrane proteins. Proteomics.8(19):3991-4011.

Ridlova G, Mortimer JC, Maslen SL, Dupree P, Stephens E. (2008) Oligosaccharide relative quantitation using isotope tagging and normal-phase liquid chromatography/mass spectrometry. Rapid Commun Mass Spectrom.22(17):2723-30.

Mills RF, Doherty ML, López-Marqués RL, Weimar T, Dupree P, Palmgren MG, Pittman JK, Williams LE. (2008) ECA3, a Golgi-localized P2A-type ATPase, plays a crucial role in manganese nutrition in Arabidopsis. Plant Physiol.146, 116-28.

Brown DM, Goubet F, Wong VW, Goodacre R, Stephens E, Dupree P, Turner SR. (2007) Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis. Plant J.52, 1154-68.

Lilley KS, Dupree P. (2007) Plant organelle proteomics. Curr Opin Plant Biol. 10, 594-9.

Palackal N, Lyon CS, Zaidi S, Luginbuhl P, Dupree P, Goubet F, Macomber JL, Short JM, Hazlewood GP, Robertson DE, Steer BA. (2007) A Multifunctional Hybrid Glycosyl Hydrolase Discovered in an Uncultured Microbial Consortium from Ruminant Gut. Applied Microbiology and Biotechnology 74, 113-124.

Maslen, S, Goubet F, Adam A, Dupree P and E Stephens. (2007) Structure elucidation of arabinoxylan isomers by normal phase liquid chromatography – MALDI-TOF/TOF tandem mass spectrometry. Carbohydrate Research 342, 724-35.

Mitchell RA, Dupree P, Shewry PR. (2007) A Novel Bioinformatics Approach Identifies Candidate Genes for the Synthesis and Feruloylation of Arabinoxylan. Plant Physiol. 144, 43-53.

Bown L, Kusaba S, Goubet F, Codrai L, Dale AG, Zhang Z, Yu X, Morris K, Ishii T, Evered C, Dupree P, Jackson S. (2007) The ectopically parting cells 1-2 (epc1-2) mutant exhibits an exaggerated response to abscisic acid. J Exp Bot. 58, 1813-1823.

Rösti J, Barton CJ, Albrecht S, Dupree P, Pauly M, Findlay K, Roberts K, and Seifert GJ. (2007) UDP-Glucose 4-Epimerase Isoforms UGE2 and UGE4 Cooperate in Providing UDP-Galactose for Cell Wall Biosynthesis and Growth of Arabidopsis thaliana. Plant Cell 19, 1565-1579.

Hartman NT, Sicilia F, Lilley KS, Dupree P. (2007) Proteomic Complex Detection Using Sedimentation. Analytical Chemistry 79, 2078-2083.

Benova-Kakosova A, Digonnet C, Goubet F, Ranocha P, Jauneau A, Pesquet E, Barbier O, Zhang Z, Capek P, Dupree P, Liskova D, Goffner D. (2006) Galactoglucomannans Increase Cell Population Density and Alter the Protoxylem/metaxylem Tracheary Element Ratio in Xylogenic Cultures of Zinnia Elegans. Plant Physiol 104, 696-709.

Pereira LA, Schoor S, Goubet F, Dupree P, Moffatt BA. (2006) Deficiency of adenosine kinase activity affects the degree of pectin methyl-esterification in cell walls of Arabidopsis thaliana. Planta 224, 1401-1414.

Klein EM, Mascheroni L, Pompa A, Ragni L, Weimar T, Lilley KS, Dupree P and Vitale A. (2006) In Vivo Activity and Stress Induction of Plant Endoplasmin. Plant J. 48 657-673.

Dunkley TP, Hester S, Shadforth IP, Runions J, Weimar T, Hanton SL, Griffin JL, Bessant C, Brandizzi F, Hawes C, Watson RB, Dupree P, Lilley KS. (2006) Mapping the Arabidopsis organelle proteome. PNAS 103, 6518-6523.

Barton CJ , Tailford L, Welchman H, Zhang Z, Gilbert HJ, Dupree P and Goubet F. (2006) Enzymatic fingerprinting of Arabidopsis pectic polysaccharides using PACE- polysaccharide analysis by carbohydrate gelelectrophoresis. Planta, 224, 163-174.

Goubet F, Strom A, Quemener B, Stephens E, Williams MA, Dupree P. (2006) Resolution of the structural isomers of partially methylesterified oligogalacturonides by polysaccharide analysis using carbohydrate gelelectrophoresis. Glycobiology, 16, 29-35.

Goubet F, Dupree P, Yu X and Oatey P. (2005) Detecting fluorescent dyes on 1-D polyacrylamide gels - How CCD technology compares with laser-based scanning. Genomics and proteomics, journal "on line".

PhalipV, Delalande F, Carapito C, Goubet F, Hatsch D, Leize-Wagner E, Dupree P, Van Dorsselaer A and Jeltsch J-M. (2005) Diversity of the exoproteome of Fusarium graminearum grown on plant cell wall. Current Genetics 48, 366-379

Goubet F, Ström A, Dupree P and Williams MAK. (2005) An investigation of pectin methylation patterns by two independent methods: capillary electrophoresis and polysaccharide analysis using carbohydrate gel electrophoresis. Carbohydr Res 340, 1193-1199

Goubet F, Dupree P, Yu X and Oatey P. (2005) Imaging fluorescent proteomics dyes CCD-based systems offer an inexpensive method of detection and analysis. International Biotechnology Laboratory, 23, 14-15

Borner GHH, Sherrier DJ, Weimar T, Michaelson LV, Hawkins ND, MacAskill A, Napier JA, Beale MH, Lilley KS and P Dupree. (2005) Analysis of detergent-resistant membranes in Arabidopsis: evidence for plasma membrane lipid rafts. Plant Physiol, 137, 104-16

Gillespie J, Rogers SW, Deery M, Dupree P and JC Rogers. (2005) A Unique Family of Proteins Associated with Internalized Membranes in the Protein Storage Vacuoles of the Brassicaceae. Plant J. 41, 429-41

Handford MG, Sicilia F, Brandizzi F, Chung JH and P Dupree. (2004) Arabidopsis thaliana expresses multiple Golgi-localised nucleotide-sugar transporters related to GONST1. Molecular and General Genomics, 272, 397-410

Dunkley TP, Watson R, Griffin JL, Dupree P, and KS Lilley. (2004) Localization of organelle proteins by isotope tagging (LOPIT). Mol Cell Proteomics, 3, 1128-1134

Dunkley TP, Dupree P, Watson RB, Lilley KS. (2004) The use of isotope-coded affinity tags (ICAT) to study organelle proteomes in Arabidopsis thaliana. Biochem Soc Trans. 32, 520-3

Palackal N, Brennan Y, Callen WN, Dupree P, Frey G, Goubet F, Hazlewood GP, Healey S, Kang YE, Kretz KA, Lee E, Tan X, Tomlinson GL, Verruto J, Wong VW, Mathur EJ, Short JM, Robertson DE, Steer BA. (2004) An Evolutionary Route To Xylanase Process Fitness. Protein Science, 13, 494-503

Lalanne E, David Honys D, Johnson A, Borner GHH , Lilley KS, Dupree P, Grossniklaus U, and D Twell. (2004) SETH1 and SETH2, two components of the glycosylphosphatidylinositol anchor biosynthetic pathway, are required for pollen germination and tube growth in Arabidopsis. Plant Cell, 16, 229-240

Handford MG, TC Baldwin, F Goubet, TA Prime, J Miles, X Yu and P Dupree. (2003) Localisation and characterisation of cell wall mannan polysaccharides in Arabidopsis thaliana. Planta 218, 27-36

Goubet, F, B Morriswood and P Dupree. (2003) Analysis of methylated and unmethylated polygalacturonic acid structure by PACE: Polysaccharide Analysis using Carbohydrate gel Electrophoresis. Analytical Biochem. 321, 174-182

Borner, GHH, KS Lilley, TJ Stevens and P Dupree. (2003) Identification of Glycosylphosphatidylinositol-Anchored Proteins in Arabidopsis. A Proteomic and Genomic Analysis. Plant Physiol. 132, 568-577

Goubet, F, A Misrahi, SK Park, Z Zhang, D Twell, and P Dupree. (2003) AtCSLA7, a Cellulose Synthase-Like Putative Glycosyltransferase, Is Important for Pollen Tube Growth and Embryogenesis in Arabidopsis. Plant Physiol. 131, 547-557

GHH Borner, DJ Sherrier, TJ Stevens, IT Arkin and P Dupree. (2002) Prediction of glycosylphosphatidylinositol (GPI)-anchored proteins in Arabidopsis: a genomic analysis. Plant Physiol. 129, 486-489

Goubet, F, P Jackson, M Deery and P Dupree. (2002) Polysaccharide Analysis using Carbohydrate gel Electrophoresis (PACE): a method to study plant cell wall polysaccharides and polysaccharide hydrolases. Analytical Biochemistry, 300, 53-68

Baldwin, TC, Handford, MG, Yuseff, I, Orellana, O and P Dupree. (2001) Identification and Characterization of GONST1, a Golgi-Localized GDP- Mannose Transporter in Arabidopsis. The Plant Cell, 13, 2283­-2295

Mahon, P and P. Dupree. (2001) Quantitative and reproducible 2D Gel analysis: Colloidal Coomassie and Phoretix 2D. Electrophoresis, 22, 2075­-2085

Prime, TA, DJ Sherrier, P. Mahon, LC Packman and P Dupree. (2000) Proteomic analysis of organelles from Arabidopsis thaliana. Electrophoresis, 21, 3488-3499

Sherrier, DJ, TA Prime and P Dupree. (1999) GPI-anchored cell surface proteins from Arabidopsis. Electrophoresis 20, 2027-2035

Wee, EGT, DJ Sherrier, TA Prime and P Dupree. (1998) Targeting of active Sialyltransferase to the plant Golgi apparatus. Plant Cell 10, 1759-1768

Santoni V et al. (1998) Use of a proteome strategy for tagging of proteins present at the plasma membrane. Plant Journal, 16, 633-641

Dupree, P and DJ Sherrier. (1998) The plant Golgi apparatus. BBA Mol.Cell.Res. 1404, 259-270

©2010 Dupree Group - Department of Biochemistry - University of Cambridge
Page Last Updated: September 2010