University of Cambridge  

Multi Imaging Unit

Department of Physiology, Development and Neuroscience, Anatomy Building


Biological specimen Preparation

Specimen preparation can be provided as a service or users can be trained to use equipment for subsequent self-access.

TEM Preparation includes:
Negative staining
We can provide Formvar film grids, Formvar/carbon grids, continuous carbon films, holey carbon films or lacy carbon films as appropriate. Grids can be glow discharged in the Edwards 306 turbo to make them hydrophilic. Nickel supports can be provided for immuno-gold negative staining. stains available are uranyl acetate, PTA or ammonium molybdate.

negatively stained HPV virus
Negatively stained HPV virus with immunogold label to surface protein
(courtesy of Dr Wei Zhang)

Fixation and thin sectioning for ultrastructure
We can provide , acrolein, glutaraldehyde and formaldehyde based fixatives. Cells and tissues can be embedded as a service or users can to taught to process their own samples and be charged for consumables and instrument access only. We routinely embed in Quetol 651 epoxy resin. Two Leica Ultracut E's are available for self access.

Fixation and thin sectioning for immuno-gold labelling
Various methods are available for post embedding immuno-gold labelling. We can attempt antigen retrieval from archive material fixed in glutaraldehyde and osmium and embedded in epoxy resin (rarely successful). Alternatively we can advise how to test new antibodies for sensitivity to fixation using secondary antibody fluorescence methods. We can then advice if there is a method that may be suitable after this preliminary screening. We have equipment for cryo-immobilisation (Leica CPC) and 2 Leica AFS freeze substitution and low temperature embedding units. Tissues that are coloured or pigment are not suitable for low temperature embedding with UV polymerisation as the colour adsorbs the UV. In that case we can use either LR White or gold as embedding media (contact jeremy for advice).

slam frozen bacteria
Slam frozen bacteria freeze substituted and embedded in epoxy resin.

 

proteous mirabilis frozen and embedded in HM20
Proteous mirabilis frozen and embedded in HM20 and immonolabelled for the curved norphplogy protein (cuortsey of Dr Daniel Gigyi)

SEM Preparation includes:
Samples for examination in the FEGSEM must either be dehydrated fully or frozen and viewed using the cryo-transfer stage. Two methods of drying are available.

Air drying
Very robust samples (bone, glass or mineral) can be dried by allowing their water to evaporate with gentle heating. Biological sample collapse to < 20% of their original volume and there is gross distortion of their surfaces. this is due to the surface tension changes ant the water/gar interface.

Critical point drying
Samples are dehydrated in organic solvents and transferred to the Polaron CPD where the solvent is replaced with liquid CO2. The unit is sealed and warmed to 37 degrees C where the liquid CO2 changes state to gas. This is vented and eliminates the surface tension changes seen in air drying from water or solvent. This is a pressure system and as such is operated by staff members only.

Freeze drying
This can be carried out in the Edwards 306 but as a service only.

Conductive metal coating
Sputter coating with 1n or more of Au or Cr can be carried out in the Quorum K756X sputter coater. Carbon can be evaporated on to samples with the Edwards 306 for EDX of freeze dried cells or sections. Histology Wax and methacrylate resin embedding and sectioning This is available as a service or for self access to two microtomes. Leica VT 1000 vibrating blade microtome This is available for self access to slice fixed or fresh tissues. fixed tissues can be cut to 20µm and fresh tissue to 150µm. Leica CM 1000 cryostat This is available as a service or self access for cutting frozen sections of fresh or fixed tissues. Self access users are recommended to buy their own knife and guide plate.

SEM example

Quick links;


Typical cost of specimen preparation and viewing

1. Embedding for stereology by light microscopy or for ultrastructural examination by TEM

Supply of fixatives, dehydration and epoxy resin embedding
of samples which are processed in batches of 1 - 5
£95.00/batch
Technician time sectioning for histology £40.00/hour
Consumables charge for histology (slides, stains & knifes) £18.00/sample
Consumables charge for thin sectioning £14.00/sample
Access to TEM £45.00/hour

This assumes fixation by immersion in small volumes of fixative. Where fixation is to be by vascular perfusion it will be supplied in larger volumes with a pro rata charge.

2. Ten samples embedded and sectioned for stereology by light
microscopy

2 batches embedded £190.00
Technician time for sectioning (assuming 30 min/block) £200.00
Consumables for histology £180.00
  {£570.00

3. Ten samples embedded and thin sectioned for transmission electron microscopy

2 batches embedded £190.00
Technician time for sectioning (assuming 30 min/block) £200.00
Consumables for thin sectioning £140.00
Four hours access to the TEM £180.00
  { £710.00

Please note for 2 & 3 technician time will vary pro rata depending on;
A. The density of the sample. Sectioning un-demineralised bone is much more time consuming that sectioning soft tissue.
B. If a specific region needs to be found that is not apparent from the gross anatomy of the sample. C. If serial sectioning is required.

4. Negative staining for TEM

Purchase of grids with support films
Continuous Formvar film grids £2.00 each
Continuous carbon film grids £3.00 each
Holey carbon film grids £3.50 each
Glow discharging each batch of grids £30.00
Access to TEM £45.00/hour

Example a.

10 Continuous Formvar film grids £20.00
1X glow discharge £30.00
3 hours access to TEM £135.00
  {£185.00

Example b.

10 Continuous carbon film grids £30.00
1X glow discharge £30.00
3 hours access to TEM £135.00
  {£195.00


Example c.

10 holey carbon film grids £35.00
1X glow discharge £30.00
3 hours access to TEM £135.00
  {£200.00

5. Specimen preparation and SEM

Supply of fixatives, dehydration and critical point drying
of samples which are processed in batches of 1 - 5
£88.00/batch
Supply of fixatives, dehydration and freeze drying
of samples which are processed in batches of 1 - 4
£88.00/batch
Plunge freezing in propane and freeze drying of
samples which are processed in batches of 1 - 4
£80.00/batch
sputter coating with Au or Cr 1 - 6 samples/batch £35.00/batch
Carbon coating 1- 4 samples £30.00
SEM access £37.00/hour
SEM access with cryo-transfer (Minimum booking 4 hours) £67.00/hour

Example A. fix, CPD and sputter coat robust samples

Ten samples fixed and critical point dried £176.00
Mounted and sputter coated with Au £70.00
2 hours SEM access £74.00
  { £320.00

Example B. fix, freeze dry and sputter coat
delicate samples

Eight samples fixed or frozen and Freeze dried £160.00
Mounted and sputter coated with Au £60.00
2 hours SEM access £74.00
  { £304.00

Example C. samples frozen, freeze dried and
carbon coated for SEM and EDX.

Eight samples frozen and Freeze dried £160.00
Mounted and carbon coated £60.00
2 hours SEM EDX access £74.00
  { £304.029

Example D. Cryo SEM access

4 hour minimum booking £268.00
additional £67.00/hour for each additional hour!



© 2009 University of Cambridge Multi-imaging unit, Department of PDN, Downing Site, Cambridge, CB2 3DY